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The map label for this gene is ynfA [C]

Identifier: 34498940

GI number: 34498940

Start: 3779871

End: 3780212

Strand: Reverse

Name: ynfA [C]

Synonym: CV_3485

Alternate gene names: 34498940

Gene position: 3780212-3779871 (Counterclockwise)

Preceding gene: 34498942

Following gene: 34498937

Centisome position: 79.57

GC content: 69.88

Gene sequence:

>342_bases
ATGGAATGGCTGACCGGCCTGCCGCGCGTGGCGGGCCTGTTCGTATTGACCGCATTGGCCGAGATCGTCGGCTGCTATCT
GCCGTGGCTGGTGTTGCGCGAGGGGCGGTCCTTGTGGCTGCTGGCCCCCACGACGCTGGCGTTGGCGCTGTTCGCCTGGC
TGCTGACCCTGCATCCGGCAGCCGCGGGCCGCACGTATGCCGCTTATGGCGGCGTTTACGTGACGGTGGCGATCGCTTGG
CTGTGGCTGGTGGACGGCGTGCGGCCGGACCGTTGGGACGCCCTGGGTTGCGCGCTGGCGCTGGCCGGGATGGCGGTGAT
CATGCTGGCACCGCGCAGCTAG

Upstream 100 bases:

>100_bases
CGGTGGTTGATGTTGATATGCTATTTAAATTTAATGTTAATGTTAAATTGCTATTTTTCATGGCGCCGATAGCGTCGCAG
CGCGCGGCTGGGGAGGAAGC

Downstream 100 bases:

>100_bases
CCGGCAAGGGTCAAGACGATGCGCTAACCTCCGCCGTCGGTTTGGCGGGGCCGCGCTTGGAGAGGTACAGCCCCAGGGCG
ATCAGCCCGATGCCCGCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MEWLTGLPRVAGLFVLTALAEIVGCYLPWLVLREGRSLWLLAPTTLALALFAWLLTLHPAAAGRTYAAYGGVYVTVAIAW
LWLVDGVRPDRWDALGCALALAGMAVIMLAPRS

Sequences:

>Translated_113_residues
MEWLTGLPRVAGLFVLTALAEIVGCYLPWLVLREGRSLWLLAPTTLALALFAWLLTLHPAAAGRTYAAYGGVYVTVAIAW
LWLVDGVRPDRWDALGCALALAGMAVIMLAPRS
>Mature_113_residues
MEWLTGLPRVAGLFVLTALAEIVGCYLPWLVLREGRSLWLLAPTTLALALFAWLLTLHPAAAGRTYAAYGGVYVTVAIAW
LWLVDGVRPDRWDALGCALALAGMAVIMLAPRS

Specific function: Unknown

COG id: COG1742

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0060 family

Homologues:

Organism=Escherichia coli, GI1787865, Length=96, Percent_Identity=59.375, Blast_Score=110, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3485_CHRVO (Q7NSE1)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_903155.1
- GeneID:   2547114
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3485
- NMPDR:   fig|243365.1.peg.3485
- HOGENOM:   HBG313568
- OMA:   TRWDVAG
- PhylomeDB:   Q7NSE1
- BioCyc:   CVIO243365:CV_3485-MONOMER
- HAMAP:   MF_00010
- InterPro:   IPR003844

Pfam domain/function: PF02694 UPF0060

EC number: NA

Molecular weight: Translated: 12222; Mature: 12222

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12a6760c)-; HASH(0x1310a200)-; HASH(0x12c21fb4)-; HASH(0x12eb1fc8)-;

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWLTGLPRVAGLFVLTALAEIVGCYLPWLVLREGRSLWLLAPTTLALALFAWLLTLHPA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCC
AAGRTYAAYGGVYVTVAIAWLWLVDGVRPDRWDALGCALALAGMAVIMLAPRS
CCCCCHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MEWLTGLPRVAGLFVLTALAEIVGCYLPWLVLREGRSLWLLAPTTLALALFAWLLTLHPA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCC
AAGRTYAAYGGVYVTVAIAWLWLVDGVRPDRWDALGCALALAGMAVIMLAPRS
CCCCCHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14500782