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The map label for this gene is ompC [H]

Identifier: 34498879

GI number: 34498879

Start: 3716438

End: 3717514

Strand: Direct

Name: ompC [H]

Synonym: CV_3424

Alternate gene names: 34498879

Gene position: 3716438-3717514 (Clockwise)

Preceding gene: 34498877

Following gene: 34498889

Centisome position: 78.22

GC content: 56.92

Gene sequence:

>1077_bases
ATGAAAAAGAGTCTGATCGCCCTGCTGGTAGCCACCCTGCCGGCTGCCGCTTTCGCCGACGTAACCATCTACGGCAAAAT
CAAAGGCGGCGTTGAATACGTCGACAACGGTTCCACCAAGCAAACCAACGTTGACGATCTGGGTTCCCGCATCGGCTTCA
AAGGTTCCGAAGATCTGGGCAACGGCCTGAAGACCATCTGGCAAGTTGAAACCGGTTTTGCCATTGACGGCAACAAGGAT
CAATACAGCAAGTCCAGCAGCGGCACCTTCGCCAACCGTAACTCCTTCATCGGTCTGCAAGGCGGCTTCGGCACCGTGCG
TCTGGGTAACGTGTCCAACTTCCTGGACAGCGACATGGGCACCGTTGACACCTGGGAATACAACAGCAACGCTCTGGGCC
TGAGCATGTTCACCCGCGACGGCACGCGTCTGAAGAACTCCGTGCGCTACGATCTGCCGACCGTAGTTCCGGGCCTGACC
GCCGCTCTGCAATATGGCGTGAAGGAAACCAAGGGTGTTGCTAACAGCGATCGTGAAACCACCGTTCTGGGCCTGGGCTA
CGAGAACAGCGGCTTCTTCGGCAAGTACGCTTACACCCACCAGAGCAAGGCTGTTTCCTCGGTTACCACCGCTTATGCCC
TGAAAGACACCGCCAACGACAAGCATCGTCTGGAAGTTGGTTACAATGCCAACAACCTGTTCGTGGGCTTCGGCTATCAA
CAAGCCAAGGGCGGCGCTGACGTTGCAGGCCAAGACTGGTTCGACCTGGTTAAGACCGGCATGACCGCATCCGCTACCCC
GGACGCAAATGGCAAGGTCAAGACCCGCGAATACGCTCTGACTGCTGCCTACACCTTCGGCGCCATCACTCCGAAATTCT
CCTACGTTCGTGGCGACAAGGTTGAAGTTGGCGGCGTGAAGCTGGACAACACCCAGTACGATCAATACGTTCTGGGCGCT
GACTACGCTATTTCCAAGCGCACCACCTTCGGCGCTCAATACGGCCAGATCGCTGTTAAGGGCACCGGCAACAAGGACCT
GAAGGCTTTCGGCCTGAACATGGTTCACGCCTTCTAA

Upstream 100 bases:

>100_bases
TGCTTGATAACAACACCATTCGGCAGGCGAAGTTGCATTTTCACAACCCAGCCAATAGCATTTGCTCACATTCCTAAACC
TAAAAAAGGATGACTTGACC

Downstream 100 bases:

>100_bases
TTCAACGGTTCGACGCAAGAACCTGCGAACTTAGACGCAAAAAAGACCCGCTTCGGCGGGTCTTTTTTCATGCCTGCTTC
AAATGAATGACAACAAATGG

Product: porin signal peptide protein

Products: NA

Alternate protein names: PIB; Protein IB; Porin [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MKKSLIALLVATLPAAAFADVTIYGKIKGGVEYVDNGSTKQTNVDDLGSRIGFKGSEDLGNGLKTIWQVETGFAIDGNKD
QYSKSSSGTFANRNSFIGLQGGFGTVRLGNVSNFLDSDMGTVDTWEYNSNALGLSMFTRDGTRLKNSVRYDLPTVVPGLT
AALQYGVKETKGVANSDRETTVLGLGYENSGFFGKYAYTHQSKAVSSVTTAYALKDTANDKHRLEVGYNANNLFVGFGYQ
QAKGGADVAGQDWFDLVKTGMTASATPDANGKVKTREYALTAAYTFGAITPKFSYVRGDKVEVGGVKLDNTQYDQYVLGA
DYAISKRTTFGAQYGQIAVKGTGNKDLKAFGLNMVHAF

Sequences:

>Translated_358_residues
MKKSLIALLVATLPAAAFADVTIYGKIKGGVEYVDNGSTKQTNVDDLGSRIGFKGSEDLGNGLKTIWQVETGFAIDGNKD
QYSKSSSGTFANRNSFIGLQGGFGTVRLGNVSNFLDSDMGTVDTWEYNSNALGLSMFTRDGTRLKNSVRYDLPTVVPGLT
AALQYGVKETKGVANSDRETTVLGLGYENSGFFGKYAYTHQSKAVSSVTTAYALKDTANDKHRLEVGYNANNLFVGFGYQ
QAKGGADVAGQDWFDLVKTGMTASATPDANGKVKTREYALTAAYTFGAITPKFSYVRGDKVEVGGVKLDNTQYDQYVLGA
DYAISKRTTFGAQYGQIAVKGTGNKDLKAFGLNMVHAF
>Mature_358_residues
MKKSLIALLVATLPAAAFADVTIYGKIKGGVEYVDNGSTKQTNVDDLGSRIGFKGSEDLGNGLKTIWQVETGFAIDGNKD
QYSKSSSGTFANRNSFIGLQGGFGTVRLGNVSNFLDSDMGTVDTWEYNSNALGLSMFTRDGTRLKNSVRYDLPTVVPGLT
AALQYGVKETKGVANSDRETTVLGLGYENSGFFGKYAYTHQSKAVSSVTTAYALKDTANDKHRLEVGYNANNLFVGFGYQ
QAKGGADVAGQDWFDLVKTGMTASATPDANGKVKTREYALTAAYTFGAITPKFSYVRGDKVEVGGVKLDNTQYDQYVLGA
DYAISKRTTFGAQYGQIAVKGTGNKDLKAFGLNMVHAF

Specific function: Serves as a slightly cation selective porin [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013793
- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 38370; Mature: 38370

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLIALLVATLPAAAFADVTIYGKIKGGVEYVDNGSTKQTNVDDLGSRIGFKGSEDLG
CCHHHHHHHHHHCCHHHHEEEEEEEEECCCEEEECCCCCCCCCHHHHHHHCCCCCCHHHH
NGLKTIWQVETGFAIDGNKDQYSKSSSGTFANRNSFIGLQGGFGTVRLGNVSNFLDSDMG
CHHHEEEEEECCEEECCCCHHCCCCCCCCCCCCCCEEEEECCCCEEEECCCHHHHHCCCC
TVDTWEYNSNALGLSMFTRDGTRLKNSVRYDLPTVVPGLTAALQYGVKETKGVANSDRET
CEEEEEECCCEEEEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCE
TVLGLGYENSGFFGKYAYTHQSKAVSSVTTAYALKDTANDKHRLEVGYNANNLFVGFGYQ
EEEEECCCCCCCEEEEEEECHHHHHHHHHHHEEEECCCCCCEEEEEECCCCEEEEECCHH
QAKGGADVAGQDWFDLVKTGMTASATPDANGKVKTREYALTAAYTFGAITPKFSYVRGDK
HCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEHEEEEEEEEEECCCCCCEEEECCCE
VEVGGVKLDNTQYDQYVLGADYAISKRTTFGAQYGQIAVKGTGNKDLKAFGLNMVHAF
EEECCEEECCCCCCCEEECCCEEEECCEECCCCCCEEEEECCCCCCCHHHCCEEEECC
>Mature Secondary Structure
MKKSLIALLVATLPAAAFADVTIYGKIKGGVEYVDNGSTKQTNVDDLGSRIGFKGSEDLG
CCHHHHHHHHHHCCHHHHEEEEEEEEECCCEEEECCCCCCCCCHHHHHHHCCCCCCHHHH
NGLKTIWQVETGFAIDGNKDQYSKSSSGTFANRNSFIGLQGGFGTVRLGNVSNFLDSDMG
CHHHEEEEEECCEEECCCCHHCCCCCCCCCCCCCCEEEEECCCCEEEECCCHHHHHCCCC
TVDTWEYNSNALGLSMFTRDGTRLKNSVRYDLPTVVPGLTAALQYGVKETKGVANSDRET
CEEEEEECCCEEEEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCE
TVLGLGYENSGFFGKYAYTHQSKAVSSVTTAYALKDTANDKHRLEVGYNANNLFVGFGYQ
EEEEECCCCCCCEEEEEEECHHHHHHHHHHHEEEECCCCCCEEEEEECCCCEEEEECCHH
QAKGGADVAGQDWFDLVKTGMTASATPDANGKVKTREYALTAAYTFGAITPKFSYVRGDK
HCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEHEEEEEEEEEECCCCCCEEEECCCE
VEVGGVKLDNTQYDQYVLGADYAISKRTTFGAQYGQIAVKGTGNKDLKAFGLNMVHAF
EEECCEEECCCCCCCEEECCCEEEECCEECCCCCCEEEEECCCCCCCHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1330818 [H]