Definition Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession NC_005085
Length 4,751,080

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The map label for this gene is ygfF [H]

Identifier: 34498861

GI number: 34498861

Start: 3699956

End: 3700696

Strand: Reverse

Name: ygfF [H]

Synonym: CV_3406

Alternate gene names: 34498861

Gene position: 3700696-3699956 (Counterclockwise)

Preceding gene: 34498862

Following gene: 34498859

Centisome position: 77.89

GC content: 71.52

Gene sequence:

>741_bases
ATGGACGGCAAGGTGGCGTTGGTGACCGGCGGCACGCGCGGAATCGGCGCGGCCACCACGCGATTGCTGGTTGCGGCCGG
CTGGCGGGTGGCGGCCAACTATCGTTCGGACGAGGCTGGCGCCGCCGCCTTGAAGGCCGAATTGGGCGAGGCGGTGCGGC
TGTTCCGCGCCGACGTGTCCGAGGAGAAGGCCATCGTCCGCCTGTTCGATGACGCGCTCTGCCATTACGGCCGGCTGGAC
GGGCTGGTCAACAATGCCGGCGTCACCGCGCCGATGTGCCGGCTGGAGGACTATAGCGCCGAGCGGGTGGAGCGCGTGTT
GCGCGTCAATGTGCTGGGGCCGCTGCTGTGCTGCCGCGAGGCGGTGCGGCGCATGTCCACCCGCCATGGCGGCGACGGCG
GCGCCATCGTCAATGTGTCGTCGGCCGCGTCGCGGCTGGGCTCCGCCGGCGAGTACATCGATTACGCCGCCAGCAAGGGG
GCGATAGACACGCTGACCCTGGGCCTGGCGCGCGAGGTGGCGGAAGAGGGCATACGCGTCAACGCGGTGCGCCCCGGACT
GATCGATACCGATATCCATGCCGCCAGCGGCGAGGCGGGCCGGGTGGCCAGGCTGGCGCCGACTGTGCCGATGCGGCGGG
GCGGCCGGGCCGACGAAGTGGCCGAGGCCATCGTCTGGCTGTTGTCCGACGCCGCGTCGTTCTGCACCGGCAGCCTGCTG
GACGTATCCGGCGGCCGCTAG

Upstream 100 bases:

>100_bases
TGCTGGAGGCCGGCGACGCCGACGGCCTGAACCGTTTGTTCGGCGAGGCGCGCGCCGCGCGCACGCGCTGGCATCAGCAA
TTTCTGCGCAGGGGCTAGCG

Downstream 100 bases:

>100_bases
CCGCCGCGCACCCCTGACAGGAAATTGGCCACCAGCGGCGAGTCATCGTCGCGGCGCACGGCGATGCCCATGGACAGATA
GGCGCCGTCGTCCGATAGCG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MDGKVALVTGGTRGIGAATTRLLVAAGWRVAANYRSDEAGAAALKAELGEAVRLFRADVSEEKAIVRLFDDALCHYGRLD
GLVNNAGVTAPMCRLEDYSAERVERVLRVNVLGPLLCCREAVRRMSTRHGGDGGAIVNVSSAASRLGSAGEYIDYAASKG
AIDTLTLGLAREVAEEGIRVNAVRPGLIDTDIHAASGEAGRVARLAPTVPMRRGGRADEVAEAIVWLLSDAASFCTGSLL
DVSGGR

Sequences:

>Translated_246_residues
MDGKVALVTGGTRGIGAATTRLLVAAGWRVAANYRSDEAGAAALKAELGEAVRLFRADVSEEKAIVRLFDDALCHYGRLD
GLVNNAGVTAPMCRLEDYSAERVERVLRVNVLGPLLCCREAVRRMSTRHGGDGGAIVNVSSAASRLGSAGEYIDYAASKG
AIDTLTLGLAREVAEEGIRVNAVRPGLIDTDIHAASGEAGRVARLAPTVPMRRGGRADEVAEAIVWLLSDAASFCTGSLL
DVSGGR
>Mature_246_residues
MDGKVALVTGGTRGIGAATTRLLVAAGWRVAANYRSDEAGAAALKAELGEAVRLFRADVSEEKAIVRLFDDALCHYGRLD
GLVNNAGVTAPMCRLEDYSAERVERVLRVNVLGPLLCCREAVRRMSTRHGGDGGAIVNVSSAASRLGSAGEYIDYAASKG
AIDTLTLGLAREVAEEGIRVNAVRPGLIDTDIHAASGEAGRVARLAPTVPMRRGGRADEVAEAIVWLLSDAASFCTGSLL
DVSGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=37.5510204081633, Blast_Score=131, Evalue=7e-31,
Organism=Homo sapiens, GI59889578, Length=235, Percent_Identity=34.0425531914894, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=30.3501945525292, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=35.3535353535354, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=30.7692307692308, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=33.739837398374, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=34.1463414634146, Blast_Score=91, Evalue=6e-19,
Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=32.2834645669291, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=31.6602316602317, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=35.2941176470588, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=27.9352226720648, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI83715985, Length=186, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=33.5051546391753, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI40548397, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI214010158, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI214010156, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI22758144, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=56.3265306122449, Blast_Score=273, Evalue=7e-75,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=36.9477911646586, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=35.3909465020576, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=33.3333333333333, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=31.7073170731707, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=31.3953488372093, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=28.6852589641434, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=31.7460317460317, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=28.9156626506024, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787905, Length=253, Percent_Identity=31.2252964426877, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=29.9610894941634, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=31.3953488372093, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787820, Length=235, Percent_Identity=27.2340425531915, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=25.4980079681275, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787891, Length=245, Percent_Identity=27.3469387755102, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=34.5098039215686, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=33.3333333333333, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=34.5528455284553, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=34.5528455284553, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=33.7209302325581, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=31.6602316602317, Blast_Score=100, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17538182, Length=222, Percent_Identity=35.5855855855856, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=33.1983805668016, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=29.2307692307692, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=250, Percent_Identity=28, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=207, Percent_Identity=34.2995169082126, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=29.277566539924, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=31.1023622047244, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=29.3893129770992, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=28.0769230769231, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=29.0076335877863, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI72000259, Length=242, Percent_Identity=28.9256198347107, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=29.277566539924, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=27.7777777777778, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=201, Percent_Identity=30.8457711442786, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=246, Percent_Identity=27.6422764227642, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=257, Percent_Identity=27.6264591439689, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=26.5384615384615, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=29.9212598425197, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=205, Percent_Identity=32.1951219512195, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=257, Percent_Identity=28.7937743190661, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=247, Percent_Identity=28.3400809716599, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=226, Percent_Identity=28.7610619469027, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=219, Percent_Identity=26.027397260274, Blast_Score=64, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=26.8774703557312, Blast_Score=76, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=219, Percent_Identity=27.3972602739726, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=221, Percent_Identity=27.6018099547511, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=193, Percent_Identity=34.7150259067358, Blast_Score=66, Evalue=6e-12,
Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=36.8627450980392, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24644339, Length=257, Percent_Identity=35.408560311284, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=35.6862745098039, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=35.0597609561753, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=32.6693227091633, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=34.0163934426229, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=31.6, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI17737361, Length=231, Percent_Identity=33.7662337662338, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI116007236, Length=241, Percent_Identity=31.1203319502075, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24663911, Length=235, Percent_Identity=29.3617021276596, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=33.6633663366337, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=30.3643724696356, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=30.3643724696356, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI281364494, Length=221, Percent_Identity=31.2217194570136, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24644337, Length=177, Percent_Identity=34.4632768361582, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI28571387, Length=238, Percent_Identity=28.9915966386555, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24641388, Length=240, Percent_Identity=30.8333333333333, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=32.258064516129, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221331218, Length=202, Percent_Identity=31.1881188118812, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665243, Length=202, Percent_Identity=31.1881188118812, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007234, Length=245, Percent_Identity=28.9795918367347, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24665247, Length=203, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI221331216, Length=203, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25691; Mature: 25691

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MDGKVALVTGGTRGIGAATTRLLVAAGWRVAANYRSDEAGAAALKAELGEAVRLFRADVS
CCCCEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
EEKAIVRLFDDALCHYGRLDGLVNNAGVTAPMCRLEDYSAERVERVLRVNVLGPLLCCRE
HHHHHHHHHHHHHHHHHHHHCHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AVRRMSTRHGGDGGAIVNVSSAASRLGSAGEYIDYAASKGAIDTLTLGLAREVAEEGIRV
HHHHHHHCCCCCCCEEEEEHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCEE
NAVRPGLIDTDIHAASGEAGRVARLAPTVPMRRGGRADEVAEAIVWLLSDAASFCTGSLL
EEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
DVSGGR
ECCCCC
>Mature Secondary Structure
MDGKVALVTGGTRGIGAATTRLLVAAGWRVAANYRSDEAGAAALKAELGEAVRLFRADVS
CCCCEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
EEKAIVRLFDDALCHYGRLDGLVNNAGVTAPMCRLEDYSAERVERVLRVNVLGPLLCCRE
HHHHHHHHHHHHHHHHHHHHCHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
AVRRMSTRHGGDGGAIVNVSSAASRLGSAGEYIDYAASKGAIDTLTLGLAREVAEEGIRV
HHHHHHHCCCCCCCEEEEEHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCEE
NAVRPGLIDTDIHAASGEAGRVARLAPTVPMRRGGRADEVAEAIVWLLSDAASFCTGSLL
EEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE
DVSGGR
ECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]