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The map label for this gene is rpfG [H]

Identifier: 34498796

GI number: 34498796

Start: 3639029

End: 3640621

Strand: Direct

Name: rpfG [H]

Synonym: CV_3341

Alternate gene names: 34498796

Gene position: 3639029-3640621 (Clockwise)

Preceding gene: 34498795

Following gene: 34498805

Centisome position: 76.59

GC content: 64.72

Gene sequence:

>1593_bases
ATGAGCCAACAAGCCTCTCTTCCCGACGACGACAACTGGCTGCTGGAAGATACCGACGGCGACGAAGCCGGACGGCCGTC
CGAGGTGCGCAAGCCCTGGAAAGTGCTGATCGTCGACGACGAAAAGGATGTGCATACCGCCACACGCATCGCGCTGCGCG
GCATCAGCTACAAGGAGCGCCCGCTGGAGCTGCTGAGCGCCTACAGCGGCGCCGAGGCCTTCCAGATGCTGCAGCAGCAC
GCGGACATCGCGCTGATCATGCTGGACGTGGTGATGGAAAGCGAGGACGCCGGCCTCAGGCTGGTGCATCGCATCCGCGA
GGAGCTGGACAACGGCGTGGTGCGCATCGTGCTGCGCACCGGCCAGCCCGGCCAGGCGCCGGAACAGGAAGTCATCCTCA
ACTACGACATCAACGACTACAAGACCAAGACCGAGCTGACCACTCAGAAGCTGTTCACCACCACCATCGCCTCGCTGCGC
GCCTACGAGAACCTGGTATCGCTGGAAAAGAACCGCCAGGGCCTGGCCAAGATCCTGGAAAGCGCGTCCGACCTGTACCA
GCTGCACTCGCTGCGGGAATTCGCGTCCGGCGTGCTGCGCCAGATCAGCGCGCTGTTGGACATCGGCACCGACGGCATCC
TGTGCGTGCGCAACGACAACCTGGTCGGCCGGCCGGAGCTGGAAATCCTGGCGGTGTCCGGCGCCTACGAATACCTGGCC
GAGTCCGGCGACCTGTCCAACGAGCCGCACCTGGCGGCGGTGTTCCAGCAGGTGTTCAAGGAAAAACGCAGCATCTACCA
GCATCCGTACGACGTGCTGTACATTTCCTCGCGCAACCGCCGCGAATTCGCCGTCCACTTCATGCCGCAGTGGCCGCTCG
ACTCGGTGGAGCGCGACCTGCTGGACGTATTCTGCCAGCGCATCTCGGCCGCCTACGACAACCTCTACCTGTACAACCAG
CTGCGCAGCGCGCAGGAGGCGACGGTGGTGGCGCTGGCCGACCTGGCGGAATTCCGCGACACCGACACCGGCGATCATGT
GCTGCGGGTGCAAAAGCTGACCGACGCCATCGCCGAGGAAATGGTCAGCCACAACCATTATCCCGAACTGATGACCCATG
AATTCATGGACATGGTCGGCATGGCCAGCATCCTGCACGACATCGGCAAGGTGGCGACGCCTGACCACATCCTGCTCAAG
CCCGGCAAGCTGGACCCGGAAGAGCGCGCCATCATGGAGCAGCACGCGACGATAGGCGCGCAGATCCTGGCCAAGTCCGC
CCAGCTGGTCGAAGGCGCCAGCTACCTGTCTCTGGGCTCCGAGATCGCCGGCGGCCATCACGAGCACTTCGACGGCAACG
GCTATCCCGGCAAGCTGCAGGGCCAGGCCATCCCGCTGTCCGCGCGCATCGTCGCGGTGGTGGACGTGTTCGACGCGCTG
CTCAACAAGCGCCCCTACAAGGAGCCCTGGAGCATGGAGGACACGATGAAGTACATCAACGGCCGCTCCGGCACCCAGTT
CGACCCGCACGTGGTCGCCGCGCTGAGCCGGCTGGTGAGCGAGGACCGGCTGCCGGTGCAGTTCGGCGACTGA

Upstream 100 bases:

>100_bases
GCGGCAACATCGAGGTTCACAGCGAAGTTGGACAGGGCACCCGATTCACGCTGGACATGCCCTGCATCGCACCCACCGTC
CAGCACAAGGAGAATGTGGC

Downstream 100 bases:

>100_bases
TCCCCGCGGCCATCCAAACAAAAACGGCAGCGCTCCGCTGCCGTTTTTCCGTTTCCGCCCGCTCGCTCAGGCGACGTAGT
TCAACACGCACAGGTACTGG

Product: sensory transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 529

Protein sequence:

>530_residues
MSQQASLPDDDNWLLEDTDGDEAGRPSEVRKPWKVLIVDDEKDVHTATRIALRGISYKERPLELLSAYSGAEAFQMLQQH
ADIALIMLDVVMESEDAGLRLVHRIREELDNGVVRIVLRTGQPGQAPEQEVILNYDINDYKTKTELTTQKLFTTTIASLR
AYENLVSLEKNRQGLAKILESASDLYQLHSLREFASGVLRQISALLDIGTDGILCVRNDNLVGRPELEILAVSGAYEYLA
ESGDLSNEPHLAAVFQQVFKEKRSIYQHPYDVLYISSRNRREFAVHFMPQWPLDSVERDLLDVFCQRISAAYDNLYLYNQ
LRSAQEATVVALADLAEFRDTDTGDHVLRVQKLTDAIAEEMVSHNHYPELMTHEFMDMVGMASILHDIGKVATPDHILLK
PGKLDPEERAIMEQHATIGAQILAKSAQLVEGASYLSLGSEIAGGHHEHFDGNGYPGKLQGQAIPLSARIVAVVDVFDAL
LNKRPYKEPWSMEDTMKYINGRSGTQFDPHVVAALSRLVSEDRLPVQFGD

Sequences:

>Translated_530_residues
MSQQASLPDDDNWLLEDTDGDEAGRPSEVRKPWKVLIVDDEKDVHTATRIALRGISYKERPLELLSAYSGAEAFQMLQQH
ADIALIMLDVVMESEDAGLRLVHRIREELDNGVVRIVLRTGQPGQAPEQEVILNYDINDYKTKTELTTQKLFTTTIASLR
AYENLVSLEKNRQGLAKILESASDLYQLHSLREFASGVLRQISALLDIGTDGILCVRNDNLVGRPELEILAVSGAYEYLA
ESGDLSNEPHLAAVFQQVFKEKRSIYQHPYDVLYISSRNRREFAVHFMPQWPLDSVERDLLDVFCQRISAAYDNLYLYNQ
LRSAQEATVVALADLAEFRDTDTGDHVLRVQKLTDAIAEEMVSHNHYPELMTHEFMDMVGMASILHDIGKVATPDHILLK
PGKLDPEERAIMEQHATIGAQILAKSAQLVEGASYLSLGSEIAGGHHEHFDGNGYPGKLQGQAIPLSARIVAVVDVFDAL
LNKRPYKEPWSMEDTMKYINGRSGTQFDPHVVAALSRLVSEDRLPVQFGD
>Mature_529_residues
SQQASLPDDDNWLLEDTDGDEAGRPSEVRKPWKVLIVDDEKDVHTATRIALRGISYKERPLELLSAYSGAEAFQMLQQHA
DIALIMLDVVMESEDAGLRLVHRIREELDNGVVRIVLRTGQPGQAPEQEVILNYDINDYKTKTELTTQKLFTTTIASLRA
YENLVSLEKNRQGLAKILESASDLYQLHSLREFASGVLRQISALLDIGTDGILCVRNDNLVGRPELEILAVSGAYEYLAE
SGDLSNEPHLAAVFQQVFKEKRSIYQHPYDVLYISSRNRREFAVHFMPQWPLDSVERDLLDVFCQRISAAYDNLYLYNQL
RSAQEATVVALADLAEFRDTDTGDHVLRVQKLTDAIAEEMVSHNHYPELMTHEFMDMVGMASILHDIGKVATPDHILLKP
GKLDPEERAIMEQHATIGAQILAKSAQLVEGASYLSLGSEIAGGHHEHFDGNGYPGKLQGQAIPLSARIVAVVDVFDALL
NKRPYKEPWSMEDTMKYINGRSGTQFDPHVVAALSRLVSEDRLPVQFGD

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG3437

COG function: function code KT; Response regulator containing a CheY-like receiver domain and an HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 59418; Mature: 59287

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQASLPDDDNWLLEDTDGDEAGRPSEVRKPWKVLIVDDEKDVHTATRIALRGISYKER
CCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCHH
PLELLSAYSGAEAFQMLQQHADIALIMLDVVMESEDAGLRLVHRIREELDNGVVRIVLRT
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEC
GQPGQAPEQEVILNYDINDYKTKTELTTQKLFTTTIASLRAYENLVSLEKNRQGLAKILE
CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SASDLYQLHSLREFASGVLRQISALLDIGTDGILCVRNDNLVGRPELEILAVSGAYEYLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCHHHHHH
ESGDLSNEPHLAAVFQQVFKEKRSIYQHPYDVLYISSRNRREFAVHFMPQWPLDSVERDL
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHH
LDVFCQRISAAYDNLYLYNQLRSAQEATVVALADLAEFRDTDTGDHVLRVQKLTDAIAEE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
MVSHNHYPELMTHEFMDMVGMASILHDIGKVATPDHILLKPGKLDPEERAIMEQHATIGA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
QILAKSAQLVEGASYLSLGSEIAGGHHEHFDGNGYPGKLQGQAIPLSARIVAVVDVFDAL
HHHHHHHHHHHCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHH
LNKRPYKEPWSMEDTMKYINGRSGTQFDPHVVAALSRLVSEDRLPVQFGD
HCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCC
>Mature Secondary Structure 
SQQASLPDDDNWLLEDTDGDEAGRPSEVRKPWKVLIVDDEKDVHTATRIALRGISYKER
CCCCCCCCCCCEEEECCCCCCCCCCHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCHH
PLELLSAYSGAEAFQMLQQHADIALIMLDVVMESEDAGLRLVHRIREELDNGVVRIVLRT
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEC
GQPGQAPEQEVILNYDINDYKTKTELTTQKLFTTTIASLRAYENLVSLEKNRQGLAKILE
CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SASDLYQLHSLREFASGVLRQISALLDIGTDGILCVRNDNLVGRPELEILAVSGAYEYLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEECCHHHHHH
ESGDLSNEPHLAAVFQQVFKEKRSIYQHPYDVLYISSRNRREFAVHFMPQWPLDSVERDL
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCCCHHHHHHHH
LDVFCQRISAAYDNLYLYNQLRSAQEATVVALADLAEFRDTDTGDHVLRVQKLTDAIAEE
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
MVSHNHYPELMTHEFMDMVGMASILHDIGKVATPDHILLKPGKLDPEERAIMEQHATIGA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
QILAKSAQLVEGASYLSLGSEIAGGHHEHFDGNGYPGKLQGQAIPLSARIVAVVDVFDAL
HHHHHHHHHHHCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHH
LNKRPYKEPWSMEDTMKYINGRSGTQFDPHVVAALSRLVSEDRLPVQFGD
HCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]