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The map label for this gene is vioC

Identifier: 34498727

GI number: 34498727

Start: 3560670

End: 3561959

Strand: Reverse

Name: vioC

Synonym: CV_3272

Alternate gene names: 34498727

Gene position: 3561959-3560670 (Counterclockwise)

Preceding gene: 34498728

Following gene: 34498726

Centisome position: 74.97

GC content: 65.58

Gene sequence:

>1290_bases
ATGAAAAGAGCAATCATAGTCGGAGGCGGGCTCGCCGGCGGGCTGACCGCCATCTACCTGGCGAAGCGCGGCTACGAGGT
CCACGTGGTGGAAAAGCGCGGCGACCCGCTGCGGGACCTGTCTTCCTACGTGGATGTGGTCAGCTCGCGGGCGATAGGCG
TCAGCATGACCGTGCGCGGCATCAAGTCGGTGCTGGCGGCCGGCATTCCGCGCGCGGAGCTGGACGCCTGCGGCGAACCC
ATCGTGGCGATGGCGTTTTCCGTCGGCGGCCAGTACCGGATGCGGGAGCTCAAGCCGCTGGAGGATTTCCGCCCGCTGTC
GCTGAACCGCGCGGCGTTTCAGAAGCTGCTGAACAAGTACGCCAACCTGGCCGGCGTCCGCTACTACTTCGAGCACAAGT
GCCTGGACGTGGATCTGGACGGCAAGTCGGTGCTGATCCAGGGCAAGGACGGCCAGCCGCAGCGCTTGCAGGGCGATATG
ATCATCGGCGCCGACGGCGCGCACTCGGCGGTGCGGCAGGCGATGCAGAGCGGGTTGCGCCGCTTCGAATTCCAGCAGAC
TTTCTTCCGCCACGGCTACAAGACGCTGGTGCTGCCGGACGCGCAGGCGCTGGGCTACCGCAAGGACACGCTGTATTTCT
TCGGCATGGACTCCGGCGGCCTGTTCGCCGGCCGCGCCGCCACCATCCCGGACGGCAGCGTCAGCATCGCGGTCTGCCTG
CCGTACAGCGGCAGCCCCAGCCTGACCACCACCGACGAGCCGACGATGCGCGCCTTTTTCGACCGTTACTTCGGCGGCCT
GCCGCGGGACGCGCGCGACGAGATGCTGCGCCAGTTCCTGGCCAAGCCCAGCAACGACCTGATCAACGTCCGTTCCAGCA
CCTTCCACTACAAGGGCAATGTGCTGCTGCTGGGCGACGCCGCCCACGCCACCGCGCCTTTCCTCGGCCAGGGCATGAAC
ATGGCGCTGGAGGACGCGCGCACCTTCGTCGAGCTGCTGGACCGCCACCAGGGCGACCAGGACAAGGCCTTTCCCGAGTT
CACCGAGCTGCGCAAGGTGCAGGCCGACGCGATGCAGGACATGGCGCGCGCCAACTACGACGTGCTCAGCTGCTCCAATC
CCATCTTCTTCATGCGGGCCCGCTACACCCGCTACATGCATAGCAAGTTTCCCGGCCTTTACCCGCCGGACATGGCGGAG
AAGCTGTACTTCACGTCCGAGCCGTACGACAGACTGCAGCAGATCCAGAGAAAACAGAACGTTTGGTACAAGATAGGGAG
GGTCAACTGA

Upstream 100 bases:

>100_bases
GAGCCGGGCTGGCTGCCCGACGCGCAAATGGAACTGCTGGATTTCTACCGCCGGCAGATGCTGGATTTGGCTTGTGGAAA
GCTTTCTAGAGAGGCCTGAA

Downstream 100 bases:

>100_bases
TGAAGATTCTGGTCATCGGCGCGGGGCCGGCCGGCCTGGTGTTCGCCAGCCAACTGAAACAGGCGCGTCCGCTGTGGGCG
ATAGACATCGTCGAAAAGAA

Product: vioC monooxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MKRAIIVGGGLAGGLTAIYLAKRGYEVHVVEKRGDPLRDLSSYVDVVSSRAIGVSMTVRGIKSVLAAGIPRAELDACGEP
IVAMAFSVGGQYRMRELKPLEDFRPLSLNRAAFQKLLNKYANLAGVRYYFEHKCLDVDLDGKSVLIQGKDGQPQRLQGDM
IIGADGAHSAVRQAMQSGLRRFEFQQTFFRHGYKTLVLPDAQALGYRKDTLYFFGMDSGGLFAGRAATIPDGSVSIAVCL
PYSGSPSLTTTDEPTMRAFFDRYFGGLPRDARDEMLRQFLAKPSNDLINVRSSTFHYKGNVLLLGDAAHATAPFLGQGMN
MALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAMQDMARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAE
KLYFTSEPYDRLQQIQRKQNVWYKIGRVN

Sequences:

>Translated_429_residues
MKRAIIVGGGLAGGLTAIYLAKRGYEVHVVEKRGDPLRDLSSYVDVVSSRAIGVSMTVRGIKSVLAAGIPRAELDACGEP
IVAMAFSVGGQYRMRELKPLEDFRPLSLNRAAFQKLLNKYANLAGVRYYFEHKCLDVDLDGKSVLIQGKDGQPQRLQGDM
IIGADGAHSAVRQAMQSGLRRFEFQQTFFRHGYKTLVLPDAQALGYRKDTLYFFGMDSGGLFAGRAATIPDGSVSIAVCL
PYSGSPSLTTTDEPTMRAFFDRYFGGLPRDARDEMLRQFLAKPSNDLINVRSSTFHYKGNVLLLGDAAHATAPFLGQGMN
MALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAMQDMARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAE
KLYFTSEPYDRLQQIQRKQNVWYKIGRVN
>Mature_429_residues
MKRAIIVGGGLAGGLTAIYLAKRGYEVHVVEKRGDPLRDLSSYVDVVSSRAIGVSMTVRGIKSVLAAGIPRAELDACGEP
IVAMAFSVGGQYRMRELKPLEDFRPLSLNRAAFQKLLNKYANLAGVRYYFEHKCLDVDLDGKSVLIQGKDGQPQRLQGDM
IIGADGAHSAVRQAMQSGLRRFEFQQTFFRHGYKTLVLPDAQALGYRKDTLYFFGMDSGGLFAGRAATIPDGSVSIAVCL
PYSGSPSLTTTDEPTMRAFFDRYFGGLPRDARDEMLRQFLAKPSNDLINVRSSTFHYKGNVLLLGDAAHATAPFLGQGMN
MALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAMQDMARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAE
KLYFTSEPYDRLQQIQRKQNVWYKIGRVN

Specific function: Unknown

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI187960045, Length=401, Percent_Identity=28.1795511221945, Blast_Score=173, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17562934, Length=443, Percent_Identity=26.410835214447, Blast_Score=161, Evalue=8e-40,
Organism=Caenorhabditis elegans, GI212646493, Length=368, Percent_Identity=25.5434782608696, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI193208447, Length=319, Percent_Identity=24.7648902821317, Blast_Score=95, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6319372, Length=423, Percent_Identity=26.7139479905437, Blast_Score=121, Evalue=2e-28,
Organism=Drosophila melanogaster, GI28573964, Length=410, Percent_Identity=27.5609756097561, Blast_Score=137, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): VIOC_CHRVO (Q9S3U9)

Other databases:

- EMBL:   AF172851
- EMBL:   AB032799
- EMBL:   AE016825
- RefSeq:   NP_902942.1
- ProteinModelPortal:   Q9S3U9
- GeneID:   2548007
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3272
- NMPDR:   fig|243365.1.peg.3272
- OMA:   LWSINFF
- PhylomeDB:   Q9S3U9
- BioCyc:   CVIO243365:CV_3272-MONOMER
- InterPro:   IPR002938
- InterPro:   IPR003042
- PRINTS:   PR00420

Pfam domain/function: PF01494 FAD_binding_3

EC number: NA

Molecular weight: Translated: 47977; Mature: 47977

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRAIIVGGGLAGGLTAIYLAKRGYEVHVVEKRGDPLRDLSSYVDVVSSRAIGVSMTVRG
CCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHH
IKSVLAAGIPRAELDACGEPIVAMAFSVGGQYRMRELKPLEDFRPLSLNRAAFQKLLNKY
HHHHHHHCCCCHHHHHCCCCHHHHHHHCCCCCHHHHCCCCHHCCCCCCCHHHHHHHHHHH
ANLAGVRYYFEHKCLDVDLDGKSVLIQGKDGQPQRLQGDMIIGADGAHSAVRQAMQSGLR
HHHHHHHEEEECEEEEEECCCCEEEEECCCCCCCEECCCEEEECCCHHHHHHHHHHHHHH
RFEFQQTFFRHGYKTLVLPDAQALGYRKDTLYFFGMDSGGLFAGRAATIPDGSVSIAVCL
HHHHHHHHHHCCCEEEEECCHHHHCCCCCEEEEEEECCCCEEECCCCCCCCCCEEEEEEE
PYSGSPSLTTTDEPTMRAFFDRYFGGLPRDARDEMLRQFLAKPSNDLINVRSSTFHYKGN
ECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEEECC
VLLLGDAAHATAPFLGQGMNMALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAMQD
EEEEECCHHHCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
MARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAEKLYFTSEPYDRLQQIQRKQN
HHHCCCCEEECCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHEEECCCHHHHHHHHHHHCC
VWYKIGRVN
CEEEECCCC
>Mature Secondary Structure
MKRAIIVGGGLAGGLTAIYLAKRGYEVHVVEKRGDPLRDLSSYVDVVSSRAIGVSMTVRG
CCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHH
IKSVLAAGIPRAELDACGEPIVAMAFSVGGQYRMRELKPLEDFRPLSLNRAAFQKLLNKY
HHHHHHHCCCCHHHHHCCCCHHHHHHHCCCCCHHHHCCCCHHCCCCCCCHHHHHHHHHHH
ANLAGVRYYFEHKCLDVDLDGKSVLIQGKDGQPQRLQGDMIIGADGAHSAVRQAMQSGLR
HHHHHHHEEEECEEEEEECCCCEEEEECCCCCCCEECCCEEEECCCHHHHHHHHHHHHHH
RFEFQQTFFRHGYKTLVLPDAQALGYRKDTLYFFGMDSGGLFAGRAATIPDGSVSIAVCL
HHHHHHHHHHCCCEEEEECCHHHHCCCCCEEEEEEECCCCEEECCCCCCCCCCEEEEEEE
PYSGSPSLTTTDEPTMRAFFDRYFGGLPRDARDEMLRQFLAKPSNDLINVRSSTFHYKGN
ECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEEECC
VLLLGDAAHATAPFLGQGMNMALEDARTFVELLDRHQGDQDKAFPEFTELRKVQADAMQD
EEEEECCHHHCCCHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
MARANYDVLSCSNPIFFMRARYTRYMHSKFPGLYPPDMAEKLYFTSEPYDRLQQIQRKQN
HHHCCCCEEECCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHEEECCCHHHHHHHHHHHCC
VWYKIGRVN
CEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11075927; 14500782