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The map label for this gene is ybcM [H]

Identifier: 34498613

GI number: 34498613

Start: 3442300

End: 3443100

Strand: Direct

Name: ybcM [H]

Synonym: CV_3158

Alternate gene names: 34498613

Gene position: 3442300-3443100 (Clockwise)

Preceding gene: 34498612

Following gene: 34498615

Centisome position: 72.45

GC content: 71.04

Gene sequence:

>801_bases
ATGGCCGACATCGCTCACCGCCTGAGCCGCATCGAGGCCGGCGAAATACGCGCCCGCCTGCCGCAGCACGTGCGGCGAGT
GCCGGTGTGCATGCCGGCGCTATGCCGCGTCCGCCATGGCGGCAAGCGCATCCGGCTGGGCGATAGGGAGATGTCGGCCG
GGCCATCCCAGCTGGTGCTGTTGCCGGCCGGCTGCGAACTGGACATCGTCAACCTGCCGGGGCCTGGCGGCTACCTGGCC
GACGTGGTCGGCCTGCCGCCGGACTTGCTGGACCGCTTCCGCGACCGCCACGGTCCGTTGCTGCTGAGGCAGCGGCCAGG
CCAGGAACTCTGCCCGACGATGGATGGCCCCCTGGCGTCGGCATGGACGCTGCTGATGGACAGCCTTCACGGCAACGCCG
CGCCGGAAATCCGCCAGCATCACGCCGAAGGCGTGCTGCTGGCCCTGGCCCTGGCCGGCCAGGCCGGACCGTTGCTTCGG
GAAAAGACCGACAGCCTGACGCAGGGGCTGCGGCAACTGATGATGCTGGATCCGGCGGCGCCGTGGAGCGTGGAAACGGC
GGCGCGCCGGCTCAACCTGGGCGCGTCGACCTTGCGCCGCCGGCTGGCTGAGGAAGACGCCGGCTTCCAGGCGATTCTGG
AAGAGGTGAGGATGGGCCTGGCCCTGCAGCAAGTGCAGGATGGCCGGCGGTCCATCGCCCAGATCGCCGAGGCCAGCGGC
TACGCGTCGGCGTCCCGCTTCGCCGCGCGCTTCCGCCAGCGTTACGGATTGACGCCCAGCGCCTTGCGCCGGACGCTTTG
A

Upstream 100 bases:

>100_bases
CCGATCGACGCCAACGCCAGCGGCGCGCTGGTAGGCTTCATGCTCAACGCCAACGCGTTGGGCAAGGCGCAGCTCACCGC
CACCTACGGCCGCTGAGCCC

Downstream 100 bases:

>100_bases
CGCCGGCCCGCCGCTCAGCCGGCGTCCTGCCTCAGCTCCAGCAGATTGCCCGCCGGATCCCGGACGAACAGCTGCTCCAA
CCTGTCGGCGGCGACGTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MADIAHRLSRIEAGEIRARLPQHVRRVPVCMPALCRVRHGGKRIRLGDREMSAGPSQLVLLPAGCELDIVNLPGPGGYLA
DVVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLASAWTLLMDSLHGNAAPEIRQHHAEGVLLALALAGQAGPLLR
EKTDSLTQGLRQLMMLDPAAPWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASG
YASASRFAARFRQRYGLTPSALRRTL

Sequences:

>Translated_266_residues
MADIAHRLSRIEAGEIRARLPQHVRRVPVCMPALCRVRHGGKRIRLGDREMSAGPSQLVLLPAGCELDIVNLPGPGGYLA
DVVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLASAWTLLMDSLHGNAAPEIRQHHAEGVLLALALAGQAGPLLR
EKTDSLTQGLRQLMMLDPAAPWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASG
YASASRFAARFRQRYGLTPSALRRTL
>Mature_265_residues
ADIAHRLSRIEAGEIRARLPQHVRRVPVCMPALCRVRHGGKRIRLGDREMSAGPSQLVLLPAGCELDIVNLPGPGGYLAD
VVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLASAWTLLMDSLHGNAAPEIRQHHAEGVLLALALAGQAGPLLRE
KTDSLTQGLRQLMMLDPAAPWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASGY
ASASRFAARFRQRYGLTPSALRRTL

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=256, Percent_Identity=33.59375, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29064; Mature: 28933

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIAHRLSRIEAGEIRARLPQHVRRVPVCMPALCRVRHGGKRIRLGDREMSAGPSQLVL
CCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCHHCCCCCEEEE
LPAGCELDIVNLPGPGGYLADVVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLAS
EECCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCEEEECCCCHHCCCCCCCHHHH
AWTLLMDSLHGNAAPEIRQHHAEGVLLALALAGQAGPLLREKTDSLTQGLRQLMMLDPAA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
PWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASG
CCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YASASRFAARFRQRYGLTPSALRRTL
CHHHHHHHHHHHHHHCCCHHHHHHCC
>Mature Secondary Structure 
ADIAHRLSRIEAGEIRARLPQHVRRVPVCMPALCRVRHGGKRIRLGDREMSAGPSQLVL
CHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCHHCCCCCEEEE
LPAGCELDIVNLPGPGGYLADVVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLAS
EECCCEEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCEEEECCCCHHCCCCCCCHHHH
AWTLLMDSLHGNAAPEIRQHHAEGVLLALALAGQAGPLLREKTDSLTQGLRQLMMLDPAA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
PWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASG
CCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YASASRFAARFRQRYGLTPSALRRTL
CHHHHHHHHHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]