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The map label for this gene is fliR1 [H]

Identifier: 34498579

GI number: 34498579

Start: 3411322

End: 3412080

Strand: Reverse

Name: fliR1 [H]

Synonym: CV_3124

Alternate gene names: 34498579

Gene position: 3412080-3411322 (Counterclockwise)

Preceding gene: 34498580

Following gene: 34498578

Centisome position: 71.82

GC content: 64.03

Gene sequence:

>759_bases
ATGCTGGCGATAAGCGATATCCAGATCAACGCCTGGGTCAGCGTGTTCGCCTGGCCGTTCGCGCGCATCGTCGGACTGTT
CCTGGCCGAGCCCGTGTTCGCTTACCGCGGCGTGCCGCGCCGTTTCAAGGCCGCGTTCGCCCTGGTGCTGACCGTGATCC
TGGCGCCCTTGCTGCCGCCGCTGCCGGCCGAAGGCATCGCCATCCTGGTCCAGCAATTGCTGATCGGGTTGTCCATGGGT
TTCGTGATGCGCATCGTGATCAGCGCGGTGGAGTTGACCGGCTTCATCATCGGGGCGCAGACCGGCCTGGGCTTCGCGAT
GTTCTACGACCCGGTGCATGCCGCCCAGGTGCCGGTGCTGTCGCAGATGCTGTCCTTGTTCACCTTTTTCCTCTTCCTCG
CCTTCGACGGCCACCACGTGGTGCTGGGCGCGCTGGCGCACAGTTTCCAGGTGTTGCCCATCGGCATGCCGATGCCGGCG
CAGGGCATCAAGGCTTTGACGCTGTGGGGCGCGCACCTGTTCGAGTGGGGGGTGTGGCTGGCGATGCCCATCATCGGCGC
GCTGCTGATCACCAACCTGGCCATCGGCGTGATGACCCGCGCCGCGCCGCAGTTCAACATCTTCTCCTTCGGCTTCCCGC
TGACCATCATGATAGGCTTCTGCACCCTGTACCTGACGCTGCCGATGATGATTCCGGTGATAGAGCGCATGTACCAGGCC
GGCTTCGACATGATGCTGCGCATGCTGCAGGCCAAGTAG

Upstream 100 bases:

>100_bases
CGATGTTCCTGGTGCTGGTGCTGGCCGGTCCGTGGATGCTGAACACGCTGATCGAGTACACCACCCGCTTGTTTCAGAGC
ATACCCAACGTGATCGGCTG

Downstream 100 bases:

>100_bases
CCCGGCCCGTCTCGTAAAGCCGGCCGGCTTTCTGCTAGAATACCGCGAATTTTGATTGACGCTCCGGCGCGCCGGGGCCA
GACAACGCACAGAGGCAAAT

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MLAISDIQINAWVSVFAWPFARIVGLFLAEPVFAYRGVPRRFKAAFALVLTVILAPLLPPLPAEGIAILVQQLLIGLSMG
FVMRIVISAVELTGFIIGAQTGLGFAMFYDPVHAAQVPVLSQMLSLFTFFLFLAFDGHHVVLGALAHSFQVLPIGMPMPA
QGIKALTLWGAHLFEWGVWLAMPIIGALLITNLAIGVMTRAAPQFNIFSFGFPLTIMIGFCTLYLTLPMMIPVIERMYQA
GFDMMLRMLQAK

Sequences:

>Translated_252_residues
MLAISDIQINAWVSVFAWPFARIVGLFLAEPVFAYRGVPRRFKAAFALVLTVILAPLLPPLPAEGIAILVQQLLIGLSMG
FVMRIVISAVELTGFIIGAQTGLGFAMFYDPVHAAQVPVLSQMLSLFTFFLFLAFDGHHVVLGALAHSFQVLPIGMPMPA
QGIKALTLWGAHLFEWGVWLAMPIIGALLITNLAIGVMTRAAPQFNIFSFGFPLTIMIGFCTLYLTLPMMIPVIERMYQA
GFDMMLRMLQAK
>Mature_252_residues
MLAISDIQINAWVSVFAWPFARIVGLFLAEPVFAYRGVPRRFKAAFALVLTVILAPLLPPLPAEGIAILVQQLLIGLSMG
FVMRIVISAVELTGFIIGAQTGLGFAMFYDPVHAAQVPVLSQMLSLFTFFLFLAFDGHHVVLGALAHSFQVLPIGMPMPA
QGIKALTLWGAHLFEWGVWLAMPIIGALLITNLAIGVMTRAAPQFNIFSFGFPLTIMIGFCTLYLTLPMMIPVIERMYQA
GFDMMLRMLQAK

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=254, Percent_Identity=36.2204724409449, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27658; Mature: 27658

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]