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The map label for this gene is himD

Identifier: 34498500

GI number: 34498500

Start: 3322686

End: 3323000

Strand: Reverse

Name: himD

Synonym: CV_3045

Alternate gene names: 34498500

Gene position: 3323000-3322686 (Counterclockwise)

Preceding gene: 34498501

Following gene: 34498499

Centisome position: 69.94

GC content: 60.0

Gene sequence:

>315_bases
ATGACCAAATCTGAGCTGATCGCGAGGCTGTCGGAACGACTGGCCGAGCGCAATTCTCAGTTGGTCTACAAAGATGCTGA
GTTGGCCGTCAAGACCATTCTGGACGCGATGGCCAACAACCTGGCGCAGGGAAGCCGCATCGAGATTCGCGGGTTCGGTA
GCTTCGATCTGAACTACCGTCCGCCGCGGGTCGGCCGCAACCCGAAGTCGGGCGCCAGCGTCTCGGTTCCTGAGAAATAC
GTGCCTCATTTCAAGGCCGGCAAGGAACTGCGCGAGCGCGTGGACTTGTCCCTTCTGGAACAGACCCAGGCCTGA

Upstream 100 bases:

>100_bases
GCTCTGAAGAGCCTGGCCGTTGACAGCGCTTCCGCCGGCACCACCAACCTGGGTGCCCTGCTGAAGGCCAAACTGTCCGG
TTCCAACGAGTAATAGCGTC

Downstream 100 bases:

>100_bases
TCGCAGTTTCATCGGTCCATATGCTAGAAAGCGCCGCGTTTGCGGCGCTTTTTTCATGCCTTCGCCGCTCGCGCGGCTTG
GGTTGCGGCGGGCTATCGTT

Product: integration host factor beta-subunit

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MTKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYRPPRVGRNPKSGASVSVPEKY
VPHFKAGKELRERVDLSLLEQTQA

Sequences:

>Translated_104_residues
MTKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYRPPRVGRNPKSGASVSVPEKY
VPHFKAGKELRERVDLSLLEQTQA
>Mature_103_residues
TKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYRPPRVGRNPKSGASVSVPEKYV
PHFKAGKELRERVDLSLLEQTQA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=96, Percent_Identity=61.4583333333333, Blast_Score=116, Evalue=3e-28,
Organism=Escherichia coli, GI1790433, Length=94, Percent_Identity=32.9787234042553, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_CHRVO (Q7NTK9)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_902715.1
- HSSP:   P0A6Y1
- ProteinModelPortal:   Q7NTK9
- SMR:   Q7NTK9
- GeneID:   2547282
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_3045
- NMPDR:   fig|243365.1.peg.3045
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- PhylomeDB:   Q7NTK9
- BioCyc:   CVIO243365:CV_3045-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11643; Mature: 11512

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYR
CCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
PPRVGRNPKSGASVSVPEKYVPHFKAGKELRERVDLSLLEQTQA
CCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYR
CHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
PPRVGRNPKSGASVSVPEKYVPHFKAGKELRERVDLSLLEQTQA
CCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782