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The map label for this gene is rbsC [H]

Identifier: 34498472

GI number: 34498472

Start: 3294258

End: 3295196

Strand: Reverse

Name: rbsC [H]

Synonym: CV_3017

Alternate gene names: 34498472

Gene position: 3295196-3294258 (Counterclockwise)

Preceding gene: 34498473

Following gene: 34498471

Centisome position: 69.36

GC content: 66.67

Gene sequence:

>939_bases
ATGACCCCGCAACAGAAAGCCAATTTGCAACGCCTCGGCCCCTTCATCGCCCTGGTGCTGGTGGCCGTCGGCCTGTCCGT
GATGAGTCCGGACTTCCTCACCGTCAACAACCTGCTGAACGTGATGCGCCAGGTGTCGATCAACGCGCTGATCGCCTTCG
GCATGACGCTGGTGATCCTGCTGGGCGGCATTGACCTGTCGGTCGGCTCCATCCTGGCGCTGTCCTCGGTGCTGACCGCC
ACCCTGTTGCGCGCAGGCGTGGATCCGATGCTGGCGACGCTGCTGGGCATCCTGGCCGGCGCGGCGATGGGCCTGTTCAA
CGGCCTGGTGGTCAGCAAGGGCAAGGTGGCGCCGTTCATCGCCACGCTGGCGTCGATGACCATCCTGCGCGGCCTGGCGC
TGGTGTTTTCCAACGGCAGCCCGATCACCGGCTTCGACAGCGAGCTGTTCTCCATGCTGGGCGGCGGCTATGTCGCCGGC
CTGGTCCCGGTGCCGGTGGTGTGGATGCTGATCCTGTTCGCCGGCTTCTGGTTCCTGCTGAAGAAGACGGTGTTCGGCCG
CCACCTGTACGCCACCGGCGGCAACGAGGAGGCGGCGCGGCTGTCCGGCGTCAAGGTGGACAGCGTCAAGCTGTGGGTGT
ACACCACCTCCGGCGCGATGGCGGCGATGGCCGGCGTGGTGCTGACCTCGCGCCTCAATTCGGCGCAGCCGACTGCCGGC
ACCGGCTACGAGCTGGACGCGATCGCCGCGGTGGTGCTGGGCGGCACCAGCCTCAGCGGCGGCCGCGGCTGGATTTTCGG
CACTCTGATCGGCGCGCTGCTGATCGGCGTGCTCAACAACGGCTTGAACCTGCTGGGCGTGTCCTCGTTCTACCAGCAGG
TGATCAAGGGCGCGGTGATCCTGCTGGCGGTACTGCTGGATCGCAGCAACAAGAAGTGA

Upstream 100 bases:

>100_bases
GCCGCCAGGCCGGCATCTTCGACGCCGCCGGCTGCAGCCAGGAAACCCTGATGGCCGCCGCGACCGGCGGCGCCGTTCAC
TCCGAAACCAGGAAGCAAGC

Downstream 100 bases:

>100_bases
CGATGGCGGCGCGCGCCGCTCAATGCAGTGCATCATTCCATTTCTCAGGGAGCATCAGCATGAAACGCATTCTTACTCCG
CTCGTGGCCGGCATCCTGGC

Product: D-ribose transport system permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTPQQKANLQRLGPFIALVLVAVGLSVMSPDFLTVNNLLNVMRQVSINALIAFGMTLVILLGGIDLSVGSILALSSVLTA
TLLRAGVDPMLATLLGILAGAAMGLFNGLVVSKGKVAPFIATLASMTILRGLALVFSNGSPITGFDSELFSMLGGGYVAG
LVPVPVVWMLILFAGFWFLLKKTVFGRHLYATGGNEEAARLSGVKVDSVKLWVYTTSGAMAAMAGVVLTSRLNSAQPTAG
TGYELDAIAAVVLGGTSLSGGRGWIFGTLIGALLIGVLNNGLNLLGVSSFYQQVIKGAVILLAVLLDRSNKK

Sequences:

>Translated_312_residues
MTPQQKANLQRLGPFIALVLVAVGLSVMSPDFLTVNNLLNVMRQVSINALIAFGMTLVILLGGIDLSVGSILALSSVLTA
TLLRAGVDPMLATLLGILAGAAMGLFNGLVVSKGKVAPFIATLASMTILRGLALVFSNGSPITGFDSELFSMLGGGYVAG
LVPVPVVWMLILFAGFWFLLKKTVFGRHLYATGGNEEAARLSGVKVDSVKLWVYTTSGAMAAMAGVVLTSRLNSAQPTAG
TGYELDAIAAVVLGGTSLSGGRGWIFGTLIGALLIGVLNNGLNLLGVSSFYQQVIKGAVILLAVLLDRSNKK
>Mature_311_residues
TPQQKANLQRLGPFIALVLVAVGLSVMSPDFLTVNNLLNVMRQVSINALIAFGMTLVILLGGIDLSVGSILALSSVLTAT
LLRAGVDPMLATLLGILAGAAMGLFNGLVVSKGKVAPFIATLASMTILRGLALVFSNGSPITGFDSELFSMLGGGYVAGL
VPVPVVWMLILFAGFWFLLKKTVFGRHLYATGGNEEAARLSGVKVDSVKLWVYTTSGAMAAMAGVVLTSRLNSAQPTAGT
GYELDAIAAVVLGGTSLSGGRGWIFGTLIGALLIGVLNNGLNLLGVSSFYQQVIKGAVILLAVLLDRSNKK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=54.1935483870968, Blast_Score=293, Evalue=8e-81,
Organism=Escherichia coli, GI1790524, Length=301, Percent_Identity=42.5249169435216, Blast_Score=218, Evalue=3e-58,
Organism=Escherichia coli, GI1788896, Length=323, Percent_Identity=40.8668730650155, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI145693152, Length=303, Percent_Identity=38.6138613861386, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI87082395, Length=289, Percent_Identity=37.7162629757785, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1788471, Length=317, Percent_Identity=39.7476340694006, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=49.6296296296296, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787793, Length=281, Percent_Identity=36.6548042704626, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=37.5, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1787794, Length=297, Percent_Identity=34.6801346801347, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32282; Mature: 32151

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPQQKANLQRLGPFIALVLVAVGLSVMSPDFLTVNNLLNVMRQVSINALIAFGMTLVIL
CCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGIDLSVGSILALSSVLTATLLRAGVDPMLATLLGILAGAAMGLFNGLVVSKGKVAPFI
HCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
ATLASMTILRGLALVFSNGSPITGFDSELFSMLGGGYVAGLVPVPVVWMLILFAGFWFLL
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KKTVFGRHLYATGGNEEAARLSGVKVDSVKLWVYTTSGAMAAMAGVVLTSRLNSAQPTAG
HHHHHCCEEEECCCCCHHHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
TGYELDAIAAVVLGGTSLSGGRGWIFGTLIGALLIGVLNNGLNLLGVSSFYQQVIKGAVI
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHH
LLAVLLDRSNKK
HHHHHHHCCCCC
>Mature Secondary Structure 
TPQQKANLQRLGPFIALVLVAVGLSVMSPDFLTVNNLLNVMRQVSINALIAFGMTLVIL
CCCHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGIDLSVGSILALSSVLTATLLRAGVDPMLATLLGILAGAAMGLFNGLVVSKGKVAPFI
HCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
ATLASMTILRGLALVFSNGSPITGFDSELFSMLGGGYVAGLVPVPVVWMLILFAGFWFLL
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KKTVFGRHLYATGGNEEAARLSGVKVDSVKLWVYTTSGAMAAMAGVVLTSRLNSAQPTAG
HHHHHCCEEEECCCCCHHHHHCCCEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
TGYELDAIAAVVLGGTSLSGGRGWIFGTLIGALLIGVLNNGLNLLGVSSFYQQVIKGAVI
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHH
LLAVLLDRSNKK
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]