| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is flgK1 [H]
Identifier: 34498334
GI number: 34498334
Start: 3155172
End: 3156959
Strand: Reverse
Name: flgK1 [H]
Synonym: CV_2879
Alternate gene names: 34498334
Gene position: 3156959-3155172 (Counterclockwise)
Preceding gene: 34498335
Following gene: 34498333
Centisome position: 66.45
GC content: 61.13
Gene sequence:
>1788_bases ATGGCTATCATCGGAGCGGACGTCTTTGGCATCGGCCTGAGCGGACTGAATGTCGCGCAAAACGCCTTGTCGGTGACCAG CAACAACATATCCAACGTCAATACCCCCGGCTACAACGCCCAGTACATGACGCAGGCCGGGCGTACGCCCGTGAACGCGG GCTTCGGCTACCTGGGGCAGGGCGTGGACGCGACCAGCGTGATGCGCACCTACAACCAGTACCTGGTCACCCAGATGCAG ACCGCGCAAACTAACAGCAGCTACTACACGACCCAGTCACAGCAGCTGCAGCAGGTTGCCAACATGATCCAGAACAGCAC GCAAAGCGTGAGCCCGGCGATCCAGTCGTTCTTCGGCGCGATGCAGACTCTGACCCAGCAGCCTAACTCCACCGCCAGCC GCCAGGCGGTGCTGGGCATGGCCCAGGCGCTGGCCACCTCCATGACCTCGATGAATTCGCAGCTGCAGCAGATTCAGCAG GGGGTGAACAACCAGATCAGCAGCTCCGTGCAGAGCATCAATGCGCTGGCGCAGCAGATCGCCAACCTTAACCAGCAGAT CGGCGCCGCCACCGGGGGCAATCCCAACGGCGCCCAGCCGAATACGCTGCTGGATCAGCGCGACCAGGCGGTGACGCAGC TGAACCAGCTGGTCGGCGCCACCATCAACAAGAACAGCGACGGTTCGTACAATGTCAGCATCGGCAGCGGCCAGCCCTTG GTCGTCGGCACGACGACCTTTTCGCTGCAGACTCAGCAGGACCCCAACAACCCGGCCAACTACCTGATAGGGCTGGCCGG GCCGAACAACTCGCTGACCATGTTGCCGAACAACATCATGAACGGCGGGCAGCTGTCGGGGCTGCTGAATTTCCGCGACG GTCCGCTGGTGCAGACGCAAAAACAGCTGGGCACCCTGGCGATCAATTTGTCCGCGGCGATGAACTATCAGAACTCGCTG GGCATGGACCTGAACGGCAACACCCCTGGCGCGGCGATCTTCCAGGACTTGTCGAAGTACGTCAACAACCCCCAGTATGC GGCGGGCCAGTTCGGGGTGGTGATGTCCGATCCTTCGCAGCTCGCTTGCGCGTCCAATCTGGCGCCGACCGGCGGCGCGG GCGGCAGCGGCGTGACGATGAGCGGCGTGTGGTCCAATCTGCCGGGCACGTACCAGACCGATATCAACAAGACTCCACCG GTGCTGGATTCCGTCACCCAGCACCCGTCGTATCAGCTGACCGGCATGACCGTCACGGCGTCGGCGACCTCGCCGATCAC CATGACGGCCACCATCACCGGCACCAATGGCGGCGGACCGTACAATGTGGTCGTCGATCCGACTCTGCCGAACAGTTACA AATTGCAGACCACGGCGGTGCCGCCGGTGGATGTCGGCATCGGCTTTCAATTGTCCGGGGTGCCTGCGACGAACCAGACT TTTACCGTGGGCCCCGCAACCAGCACCAAGAATTCCGGCGACAGCAACAATCTGCGCCAGATGACCGCGCAGCAGAATAT CAATCTGGTGAACGGGCAGTCCTACCAGGGCTTTTACTCGACGATGGTGGCATCGGTGGGCAATGCCACCAATACGGTGA ATCTGCAGAATCAGACCGCGCAGACGACGCTGCAGGAAGCGCAGAAAAACAATTCCAATGCCTCCGGCGTGAACCTGGAC CAAGAAGCCGCGAATCTGATCAAGTACCAGCAGTCATACCAAGCATGCAGCAAGGTGATACAGATTGCGCAGAGCACGTT CAGCACAATCCTGAACGCCTTGTCCTGA
Upstream 100 bases:
>100_bases GCGCAAACTGGTCGACGTGGCGGCGAGCCTGGCGCAACAAGTGGCCAGGACTTGATCAAGCTTTGGCGAAAACGGTCGAT AAAGGCTTAGAGAGGTAATC
Downstream 100 bases:
>100_bases TTTGGTGAAGGAGCACGAATATGCGCATCAGTTCAAACACCCTATACCAGTCCGGCGTCAATAATATGTCGGCGCTGCAG TCGGATCTGCTTCAACTTAA
Product: flagellar hook-associated protein 1
Products: NA
Alternate protein names: HAP1 [H]
Number of amino acids: Translated: 595; Mature: 594
Protein sequence:
>595_residues MAIIGADVFGIGLSGLNVAQNALSVTSNNISNVNTPGYNAQYMTQAGRTPVNAGFGYLGQGVDATSVMRTYNQYLVTQMQ TAQTNSSYYTTQSQQLQQVANMIQNSTQSVSPAIQSFFGAMQTLTQQPNSTASRQAVLGMAQALATSMTSMNSQLQQIQQ GVNNQISSSVQSINALAQQIANLNQQIGAATGGNPNGAQPNTLLDQRDQAVTQLNQLVGATINKNSDGSYNVSIGSGQPL VVGTTTFSLQTQQDPNNPANYLIGLAGPNNSLTMLPNNIMNGGQLSGLLNFRDGPLVQTQKQLGTLAINLSAAMNYQNSL GMDLNGNTPGAAIFQDLSKYVNNPQYAAGQFGVVMSDPSQLACASNLAPTGGAGGSGVTMSGVWSNLPGTYQTDINKTPP VLDSVTQHPSYQLTGMTVTASATSPITMTATITGTNGGGPYNVVVDPTLPNSYKLQTTAVPPVDVGIGFQLSGVPATNQT FTVGPATSTKNSGDSNNLRQMTAQQNINLVNGQSYQGFYSTMVASVGNATNTVNLQNQTAQTTLQEAQKNNSNASGVNLD QEAANLIKYQQSYQACSKVIQIAQSTFSTILNALS
Sequences:
>Translated_595_residues MAIIGADVFGIGLSGLNVAQNALSVTSNNISNVNTPGYNAQYMTQAGRTPVNAGFGYLGQGVDATSVMRTYNQYLVTQMQ TAQTNSSYYTTQSQQLQQVANMIQNSTQSVSPAIQSFFGAMQTLTQQPNSTASRQAVLGMAQALATSMTSMNSQLQQIQQ GVNNQISSSVQSINALAQQIANLNQQIGAATGGNPNGAQPNTLLDQRDQAVTQLNQLVGATINKNSDGSYNVSIGSGQPL VVGTTTFSLQTQQDPNNPANYLIGLAGPNNSLTMLPNNIMNGGQLSGLLNFRDGPLVQTQKQLGTLAINLSAAMNYQNSL GMDLNGNTPGAAIFQDLSKYVNNPQYAAGQFGVVMSDPSQLACASNLAPTGGAGGSGVTMSGVWSNLPGTYQTDINKTPP VLDSVTQHPSYQLTGMTVTASATSPITMTATITGTNGGGPYNVVVDPTLPNSYKLQTTAVPPVDVGIGFQLSGVPATNQT FTVGPATSTKNSGDSNNLRQMTAQQNINLVNGQSYQGFYSTMVASVGNATNTVNLQNQTAQTTLQEAQKNNSNASGVNLD QEAANLIKYQQSYQACSKVIQIAQSTFSTILNALS >Mature_594_residues AIIGADVFGIGLSGLNVAQNALSVTSNNISNVNTPGYNAQYMTQAGRTPVNAGFGYLGQGVDATSVMRTYNQYLVTQMQT AQTNSSYYTTQSQQLQQVANMIQNSTQSVSPAIQSFFGAMQTLTQQPNSTASRQAVLGMAQALATSMTSMNSQLQQIQQG VNNQISSSVQSINALAQQIANLNQQIGAATGGNPNGAQPNTLLDQRDQAVTQLNQLVGATINKNSDGSYNVSIGSGQPLV VGTTTFSLQTQQDPNNPANYLIGLAGPNNSLTMLPNNIMNGGQLSGLLNFRDGPLVQTQKQLGTLAINLSAAMNYQNSLG MDLNGNTPGAAIFQDLSKYVNNPQYAAGQFGVVMSDPSQLACASNLAPTGGAGGSGVTMSGVWSNLPGTYQTDINKTPPV LDSVTQHPSYQLTGMTVTASATSPITMTATITGTNGGGPYNVVVDPTLPNSYKLQTTAVPPVDVGIGFQLSGVPATNQTF TVGPATSTKNSGDSNNLRQMTAQQNINLVNGQSYQGFYSTMVASVGNATNTVNLQNQTAQTTLQEAQKNNSNASGVNLDQ EAANLIKYQQSYQACSKVIQIAQSTFSTILNALS
Specific function: Unknown
COG id: COG1256
COG function: function code N; Flagellar hook-associated protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787323, Length=595, Percent_Identity=31.4285714285714, Blast_Score=231, Evalue=9e-62,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR001444 - InterPro: IPR002371 [H]
Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 62152; Mature: 62021
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS00588 FLAGELLA_BB_ROD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIIGADVFGIGLSGLNVAQNALSVTSNNISNVNTPGYNAQYMTQAGRTPVNAGFGYLGQ CEEEECCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHCC GVDATSVMRTYNQYLVTQMQTAQTNSSYYTTQSQQLQQVANMIQNSTQSVSPAIQSFFGA CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHH MQTLTQQPNSTASRQAVLGMAQALATSMTSMNSQLQQIQQGVNNQISSSVQSINALAQQI HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANLNQQIGAATGGNPNGAQPNTLLDQRDQAVTQLNQLVGATINKNSDGSYNVSIGSGQPL HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEE VVGTTTFSLQTQQDPNNPANYLIGLAGPNNSLTMLPNNIMNGGQLSGLLNFRDGPLVQTQ EEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEECCHHHCCCCCEEEEEECCCCCCHHHH KQLGTLAINLSAAMNYQNSLGMDLNGNTPGAAIFQDLSKYVNNPQYAAGQFGVVMSDPSQ HHHCEEEEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH LACASNLAPTGGAGGSGVTMSGVWSNLPGTYQTDINKTPPVLDSVTQHPSYQLTGMTVTA HHHHCCCCCCCCCCCCCCEECCHHCCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEEEEE SATSPITMTATITGTNGGGPYNVVVDPTLPNSYKLQTTAVPPVDVGIGFQLSGVPATNQT CCCCCEEEEEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCEECCCEEECCCCCCCCE FTVGPATSTKNSGDSNNLRQMTAQQNINLVNGQSYQGFYSTMVASVGNATNTVNLQNQTA EEECCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHH QTTLQEAQKNNSNASGVNLDQEAANLIKYQQSYQACSKVIQIAQSTFSTILNALS HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AIIGADVFGIGLSGLNVAQNALSVTSNNISNVNTPGYNAQYMTQAGRTPVNAGFGYLGQ EEEECCHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCHHCC GVDATSVMRTYNQYLVTQMQTAQTNSSYYTTQSQQLQQVANMIQNSTQSVSPAIQSFFGA CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHH MQTLTQQPNSTASRQAVLGMAQALATSMTSMNSQLQQIQQGVNNQISSSVQSINALAQQI HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANLNQQIGAATGGNPNGAQPNTLLDQRDQAVTQLNQLVGATINKNSDGSYNVSIGSGQPL HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEE VVGTTTFSLQTQQDPNNPANYLIGLAGPNNSLTMLPNNIMNGGQLSGLLNFRDGPLVQTQ EEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEECCHHHCCCCCEEEEEECCCCCCHHHH KQLGTLAINLSAAMNYQNSLGMDLNGNTPGAAIFQDLSKYVNNPQYAAGQFGVVMSDPSQ HHHCEEEEEEHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH LACASNLAPTGGAGGSGVTMSGVWSNLPGTYQTDINKTPPVLDSVTQHPSYQLTGMTVTA HHHHCCCCCCCCCCCCCCEECCHHCCCCCCEECCCCCCCCHHHHHHCCCCEEEEEEEEEE SATSPITMTATITGTNGGGPYNVVVDPTLPNSYKLQTTAVPPVDVGIGFQLSGVPATNQT CCCCCEEEEEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCEECCCEEECCCCCCCCE FTVGPATSTKNSGDSNNLRQMTAQQNINLVNGQSYQGFYSTMVASVGNATNTVNLQNQTA EEECCCCCCCCCCCCCHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHH QTTLQEAQKNNSNASGVNLDQEAANLIKYQQSYQACSKVIQIAQSTFSTILNALS HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 8158647 [H]