| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34498289
Identifier: 34498289
GI number: 34498289
Start: 3088354
End: 3089583
Strand: Direct
Name: 34498289
Synonym: CV_2834
Alternate gene names: NA
Gene position: 3088354-3089583 (Clockwise)
Preceding gene: 34498288
Following gene: 34498290
Centisome position: 65.0
GC content: 69.11
Gene sequence:
>1230_bases ATGAAGCTGGCCCACCTGCCCCTGCCCGCGCACCTGTCCTATTGCACCAATATCCATGCCGGCGACAGCCTGGCCGAAGT CGAGGCCAGCCTGGACGGCTTCCTGCCGGCGATCCGCGCCCATCTGGAAGAATGGCGGGCGCTGGATTCCGCCGCGCCCT TCGGCCTGGGCCTGCGGTTGTCCGCCCAGGCGGCGGAAAGCCTGCTCGACGAAGATGCGCTGCGCGCTTTCGCCGCTCGG CTGGCGTCGCTGCGCGCCTACGTGTTCACCATCAACGCCTTTCCCTGGGGCAACTTCCACCAGCGGCCAGTCAAACAGGC CGTGTATCAGCCGGACTGGCGCAGCAGCCGGCGCCTCGCCTATACCCTGCATTGCGCGCGGACGCTGGCCGCCTTGCTGC CCGATGGCGTCGAGGGCAGCATTTCCACCGTGCCGCTGGGCTTCGCCGCCGGGGATCGCGCAACCGCGATGGCGGACTGT CTGCCGCAACTGCGCCAGGCTGTGCTTGAGCTCAGCCTGCTGATGCGCGCGACCGGCAAGGAAATCGTCCTGGCGCTGGA GCCGGAGCCGGCCTGCCTGCTGGAGAATGCCGCCGACACGCTGCTTTTCTTCCGGCGATATTGGTTCGCCGACGACAATC TGGCGCAGCTGGCCCGGCTGGCCGCCTGCTCGCAGCCCGAGGCGCGGCGGCTGGCGCAACGCCACCTGGGCGTCTGCTAC GACGTATGCCATGGCGCGGTGGAGTTCGAAGACCCCTGCGCCGCGCTCTCAGGCTTGCGGGACGCCGGCGTCCGCGTCGC CAAGATCCAGTTGTCCTGCGCGCTGCGCGCCGAAGCCATGGACCCGCTCGTCGCGCGCCAGCTCCAGTCCTTCGACGACG GCGTCTACCTGCACCAGGTGGTCAGGCGCGGCGCCGACGGCCTGCGCCGCCACGCCGACCTGCCGCAAGCCTTGGCCCTG CCCGCTGATGCCATCCAGGGAGAAGCATGGCGCGTGCATTGCCATGTGCCGCTGTTCTGGCAAGCGCCGCCCGAGGCAGG CCTGGCCAGCACCCGCGACAGCCTGGACGCGGTGCTGGCTATGCTGAGCCGGCAGCCCGTCAGCGCCCATCTCGAGGTGG AAACCTATACCTGGGACGTCTTGCCGCCCCAATTGCGCGAAATCCCCAAGGCCCAAGCCATCGCGCTCGAACTGCATGCT GTCCTCAAGGAGTTGCGCCATGAGCGGTGA
Upstream 100 bases:
>100_bases GGGTGATGCGCAGCATCCTCTGGCTGCAACGATGCCTCGCCTCCTCCCCGGCATCCGCGCACGCGGATACCGCCGCGGCC GCCGCCTGCGGGGCCGCGCG
Downstream 100 bases:
>100_bases AGCCGTTTCGTCGATGCCGGTCTGGCTTCGCCTGGGCCGCGTTTCCAATCTGCCCACCGTGCTCAGCAACGCGCTGGCCG CCGCCCTGCTGGGCTCGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MKLAHLPLPAHLSYCTNIHAGDSLAEVEASLDGFLPAIRAHLEEWRALDSAAPFGLGLRLSAQAAESLLDEDALRAFAAR LASLRAYVFTINAFPWGNFHQRPVKQAVYQPDWRSSRRLAYTLHCARTLAALLPDGVEGSISTVPLGFAAGDRATAMADC LPQLRQAVLELSLLMRATGKEIVLALEPEPACLLENAADTLLFFRRYWFADDNLAQLARLAACSQPEARRLAQRHLGVCY DVCHGAVEFEDPCAALSGLRDAGVRVAKIQLSCALRAEAMDPLVARQLQSFDDGVYLHQVVRRGADGLRRHADLPQALAL PADAIQGEAWRVHCHVPLFWQAPPEAGLASTRDSLDAVLAMLSRQPVSAHLEVETYTWDVLPPQLREIPKAQAIALELHA VLKELRHER
Sequences:
>Translated_409_residues MKLAHLPLPAHLSYCTNIHAGDSLAEVEASLDGFLPAIRAHLEEWRALDSAAPFGLGLRLSAQAAESLLDEDALRAFAAR LASLRAYVFTINAFPWGNFHQRPVKQAVYQPDWRSSRRLAYTLHCARTLAALLPDGVEGSISTVPLGFAAGDRATAMADC LPQLRQAVLELSLLMRATGKEIVLALEPEPACLLENAADTLLFFRRYWFADDNLAQLARLAACSQPEARRLAQRHLGVCY DVCHGAVEFEDPCAALSGLRDAGVRVAKIQLSCALRAEAMDPLVARQLQSFDDGVYLHQVVRRGADGLRRHADLPQALAL PADAIQGEAWRVHCHVPLFWQAPPEAGLASTRDSLDAVLAMLSRQPVSAHLEVETYTWDVLPPQLREIPKAQAIALELHA VLKELRHER >Mature_409_residues MKLAHLPLPAHLSYCTNIHAGDSLAEVEASLDGFLPAIRAHLEEWRALDSAAPFGLGLRLSAQAAESLLDEDALRAFAAR LASLRAYVFTINAFPWGNFHQRPVKQAVYQPDWRSSRRLAYTLHCARTLAALLPDGVEGSISTVPLGFAAGDRATAMADC LPQLRQAVLELSLLMRATGKEIVLALEPEPACLLENAADTLLFFRRYWFADDNLAQLARLAACSQPEARRLAQRHLGVCY DVCHGAVEFEDPCAALSGLRDAGVRVAKIQLSCALRAEAMDPLVARQLQSFDDGVYLHQVVRRGADGLRRHADLPQALAL PADAIQGEAWRVHCHVPLFWQAPPEAGLASTRDSLDAVLAMLSRQPVSAHLEVETYTWDVLPPQLREIPKAQAIALELHA VLKELRHER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44930; Mature: 44930
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLAHLPLPAHLSYCTNIHAGDSLAEVEASLDGFLPAIRAHLEEWRALDSAAPFGLGLRL CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE SAQAAESLLDEDALRAFAARLASLRAYVFTINAFPWGNFHQRPVKQAVYQPDWRSSRRLA CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCEE YTLHCARTLAALLPDGVEGSISTVPLGFAAGDRATAMADCLPQLRQAVLELSLLMRATGK EHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC EIVLALEPEPACLLENAADTLLFFRRYWFADDNLAQLARLAACSQPEARRLAQRHLGVCY EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH DVCHGAVEFEDPCAALSGLRDAGVRVAKIQLSCALRAEAMDPLVARQLQSFDDGVYLHQV HHHCCCCCCCCHHHHHHCHHHCCCEEEEEEEHHHHHHHHCCHHHHHHHHHCCCCHHHHHH VRRGADGLRRHADLPQALALPADAIQGEAWRVHCHVPLFWQAPPEAGLASTRDSLDAVLA HHHCHHHHHHHCCCCHHHCCCHHHHCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHH MLSRQPVSAHLEVETYTWDVLPPQLREIPKAQAIALELHAVLKELRHER HHHCCCCCEEEEEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKLAHLPLPAHLSYCTNIHAGDSLAEVEASLDGFLPAIRAHLEEWRALDSAAPFGLGLRL CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE SAQAAESLLDEDALRAFAARLASLRAYVFTINAFPWGNFHQRPVKQAVYQPDWRSSRRLA CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCEE YTLHCARTLAALLPDGVEGSISTVPLGFAAGDRATAMADCLPQLRQAVLELSLLMRATGK EHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC EIVLALEPEPACLLENAADTLLFFRRYWFADDNLAQLARLAACSQPEARRLAQRHLGVCY EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH DVCHGAVEFEDPCAALSGLRDAGVRVAKIQLSCALRAEAMDPLVARQLQSFDDGVYLHQV HHHCCCCCCCCHHHHHHCHHHCCCEEEEEEEHHHHHHHHCCHHHHHHHHHCCCCHHHHHH VRRGADGLRRHADLPQALALPADAIQGEAWRVHCHVPLFWQAPPEAGLASTRDSLDAVLA HHHCHHHHHHHCCCCHHHCCCHHHHCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHH MLSRQPVSAHLEVETYTWDVLPPQLREIPKAQAIALELHAVLKELRHER HHHCCCCCEEEEEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA