| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498197
Identifier: 34498197
GI number: 34498197
Start: 2978855
End: 2979991
Strand: Direct
Name: 34498197
Synonym: CV_2742
Alternate gene names: NA
Gene position: 2978855-2979991 (Clockwise)
Preceding gene: 34498195
Following gene: 34498198
Centisome position: 62.7
GC content: 66.58
Gene sequence:
>1137_bases CTGGACAGCCATAACGATGAAACCCGCCTGCTGGCGCGCGCCTTGTTCAACGCCTGGCTGGTCGACCAGGACAAAGGCAT GGGCCGGCTCGGCACTCAGCAGCTGCAAGGCCTGCTGGACATCGCCCAGGATCCCCTGCTGCGCGCGGATCTGCCCGGCA AGCTGCCATCGCCCAAACCCAACCCCTTCGCCGACAAAAAGGAGGTGTCCTGGATATCCGTCCCCGCCGCCGGCGGCCAG GCGGTAAGCGACATCGCCTTGCTGCCCGACCTGCGCCTGCTGGTCGCGCAAGGCGAGGCCGGCGTCACCCTGCGCGACGA CAGAGGCAAGGTTCTGCATCGTTTCTCCGCGCCGGCGGATAATATCGTACTGGCCGACAGCGGCCAGGTCGCCCTTGCCG CGATCCACCGCGGCGAGATGCTGTGCGTGCAGCGGCTGGACCTGGTGACGCGCGAACAGCGCGACCTGGGCGCCATCGCC GTCGATTGCTACGCCGCCAGCTTCGACGGCGTCGGCTGGACGGTCGGCCAGGGCGACGCGATCCGGATACTGGACACCGG CCACGGACTCGGCCGCGTGCTGTGGCAGATAGACAAGCTGCCGGGACGCGCGGTCCGCATTCTGCGCAGCCCGTCTTGCG AGCAGTACGAGCTGGTCGATCCCGACAATAAAATGCTGTTGTGGCAATACAGCCTGCCCGGCCGGCGGCTGGCGTCACGC GGCCATGTGCCGGCGCTGGAAAAGAATACCGAAGTATCGGTCATTCCTTCGCGCTGGGGCGGCTACCGCTACTTCTGGAT GGCGTGGGACGAGAAGGACAGCCCCTGGCTGGTCAGCCAGCGCCCCGGCAAGGAAAAGGAGCATGGCCTGGCGCTGCCGC CCCAGATGTCCGGAGCCGCGATCAACGTCACCCTGGGCCGAGCGGGGCTGGCGGTATCGCTGCGACAGGAGAGCGATAGC TGCGTGGTACTGGCCCGCGACGGCGAATCGTATCCGGACATCGCTTTCTCCTGGCCGGCCGGCGTCTTCGTCTGGACCAA AATGTACGGCGACTGCTGGCTGATGTTCGACCGCTTCGGCCGGGTCGCGATCATGGACATGGAACGCTGCTACGCCAGCA TGCTCACCATAGCCTGA
Upstream 100 bases:
>100_bases GCCGGACTCGCTGGACAGCCAGGAGGCGCGCATCCTGGCGATACGCGACGACGACGCCCGCGGGACGGAGCGCGCGGCGA TCGCCCACGCCTTGCTGGCG
Downstream 100 bases:
>100_bases TGGCTCTGCCTCATAACGATGACAAGGAATATTTGATGATGAACGCAAGCATCCCCCTGCTCTGCCTGGCGCTGGCCGCC CCGATCGCCTCGGCGGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MDSHNDETRLLARALFNAWLVDQDKGMGRLGTQQLQGLLDIAQDPLLRADLPGKLPSPKPNPFADKKEVSWISVPAAGGQ AVSDIALLPDLRLLVAQGEAGVTLRDDRGKVLHRFSAPADNIVLADSGQVALAAIHRGEMLCVQRLDLVTREQRDLGAIA VDCYAASFDGVGWTVGQGDAIRILDTGHGLGRVLWQIDKLPGRAVRILRSPSCEQYELVDPDNKMLLWQYSLPGRRLASR GHVPALEKNTEVSVIPSRWGGYRYFWMAWDEKDSPWLVSQRPGKEKEHGLALPPQMSGAAINVTLGRAGLAVSLRQESDS CVVLARDGESYPDIAFSWPAGVFVWTKMYGDCWLMFDRFGRVAIMDMERCYASMLTIA
Sequences:
>Translated_378_residues MDSHNDETRLLARALFNAWLVDQDKGMGRLGTQQLQGLLDIAQDPLLRADLPGKLPSPKPNPFADKKEVSWISVPAAGGQ AVSDIALLPDLRLLVAQGEAGVTLRDDRGKVLHRFSAPADNIVLADSGQVALAAIHRGEMLCVQRLDLVTREQRDLGAIA VDCYAASFDGVGWTVGQGDAIRILDTGHGLGRVLWQIDKLPGRAVRILRSPSCEQYELVDPDNKMLLWQYSLPGRRLASR GHVPALEKNTEVSVIPSRWGGYRYFWMAWDEKDSPWLVSQRPGKEKEHGLALPPQMSGAAINVTLGRAGLAVSLRQESDS CVVLARDGESYPDIAFSWPAGVFVWTKMYGDCWLMFDRFGRVAIMDMERCYASMLTIA >Mature_378_residues MDSHNDETRLLARALFNAWLVDQDKGMGRLGTQQLQGLLDIAQDPLLRADLPGKLPSPKPNPFADKKEVSWISVPAAGGQ AVSDIALLPDLRLLVAQGEAGVTLRDDRGKVLHRFSAPADNIVLADSGQVALAAIHRGEMLCVQRLDLVTREQRDLGAIA VDCYAASFDGVGWTVGQGDAIRILDTGHGLGRVLWQIDKLPGRAVRILRSPSCEQYELVDPDNKMLLWQYSLPGRRLASR GHVPALEKNTEVSVIPSRWGGYRYFWMAWDEKDSPWLVSQRPGKEKEHGLALPPQMSGAAINVTLGRAGLAVSLRQESDS CVVLARDGESYPDIAFSWPAGVFVWTKMYGDCWLMFDRFGRVAIMDMERCYASMLTIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41704; Mature: 41704
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSHNDETRLLARALFNAWLVDQDKGMGRLGTQQLQGLLDIAQDPLLRADLPGKLPSPKP CCCCCHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCC NPFADKKEVSWISVPAAGGQAVSDIALLPDLRLLVAQGEAGVTLRDDRGKVLHRFSAPAD CCCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCCEEEEECCCCC NIVLADSGQVALAAIHRGEMLCVQRLDLVTREQRDLGAIAVDCYAASFDGVGWTVGQGDA CEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEECCCCE IRILDTGHGLGRVLWQIDKLPGRAVRILRSPSCEQYELVDPDNKMLLWQYSLPGRRLASR EEEEECCCCHHHHHHHHHCCCCCEEHEECCCCCCCEEEECCCCCEEEEEECCCCHHHHCC GHVPALEKNTEVSVIPSRWGGYRYFWMAWDEKDSPWLVSQRPGKEKEHGLALPPQMSGAA CCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCE INVTLGRAGLAVSLRQESDSCVVLARDGESYPDIAFSWPAGVFVWTKMYGDCWLMFDRFG EEEEECCCCEEEEEEECCCCEEEEEECCCCCCCEEEECCCCEEEEEEHHCCEEEEEHHCC RVAIMDMERCYASMLTIA CEEEEEHHHHHHHHHHCC >Mature Secondary Structure MDSHNDETRLLARALFNAWLVDQDKGMGRLGTQQLQGLLDIAQDPLLRADLPGKLPSPKP CCCCCHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCC NPFADKKEVSWISVPAAGGQAVSDIALLPDLRLLVAQGEAGVTLRDDRGKVLHRFSAPAD CCCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCCEEEEECCCCC NIVLADSGQVALAAIHRGEMLCVQRLDLVTREQRDLGAIAVDCYAASFDGVGWTVGQGDA CEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEECCCCE IRILDTGHGLGRVLWQIDKLPGRAVRILRSPSCEQYELVDPDNKMLLWQYSLPGRRLASR EEEEECCCCHHHHHHHHHCCCCCEEHEECCCCCCCEEEECCCCCEEEEEECCCCHHHHCC GHVPALEKNTEVSVIPSRWGGYRYFWMAWDEKDSPWLVSQRPGKEKEHGLALPPQMSGAA CCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCE INVTLGRAGLAVSLRQESDSCVVLARDGESYPDIAFSWPAGVFVWTKMYGDCWLMFDRFG EEEEECCCCEEEEEEECCCCEEEEEECCCCCCCEEEECCCCEEEEEEHHCCEEEEEHHCC RVAIMDMERCYASMLTIA CEEEEEHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA