| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is nfdA [H]
Identifier: 34498125
GI number: 34498125
Start: 2886315
End: 2888231
Strand: Direct
Name: nfdA [H]
Synonym: CV_2670
Alternate gene names: 34498125
Gene position: 2886315-2888231 (Clockwise)
Preceding gene: 34498123
Following gene: 34498126
Centisome position: 60.75
GC content: 64.42
Gene sequence:
>1917_bases ATGAGCGATCATCACCACCACGACCATCATCTGGGCTGCGCTTGCTGCGCGCTGCCGTTGCTGGAACTGCTGGACCAGCC GCAACTGTCGCAGGATGAATGGCAGCGAGAACTGGAAACGCTGGCGCCAGAACTGGGCAAGCGGTTCCCACGGCCCGGCC AGCAGGAAAGCGCCATCTTTCACGGCGGCAGCATCCGACCGCTGGCGGCGGCCGGCCCCAGCCGCGTAGCCGCGCTGGGC ATGTCCGGCGGGCGCATCGTGGCCATGGGGGACCTGGACGACGTGCGCGCGGCGATGGCCAGCCACCGTCCGTTCCGCGA GATCGACCTGGACGGCCGCGCGCTGCTGCCGGGCCTGGTGGACCCTCACATGCACATCATGCCCAGCGCGCTGTTCAAAA GCTGGATATCGCTGAGCGCCTTCGGCGTCACCCGAAACAGCCAGGACGGCGAAGACGCCCAGGTGCTGAATCCGGACTAC AGCTACCAACAGATCAAGGACAAGCTCCTGCCGGCCATCGCGCAGGCAAAACAACCCGGCGCCGCATCCAACTGGGTGCT CGGCTTCGGCGTCGACCCCTCGCTGATGCGGGAATGGGTGGATATCAAGGCCTCCTCCCTGGACGAGCTGGCTCCGCCGG ACGACAACATCGCCGTCTTCCTGCTCAACGCCTCCGGCCACATCGGCTACGCCAACACCGCGGCGATGAAGGAAGCCGGA CTCACGCCGGAACAGATCAAAAAGTGCGAAGGCGTGCTGACGGAAGCCAACATTATCCAGATCATGGGCAAGATTCCTAA ACGGATACTGGCGAAAGACCTGCTGCGCAACCTGCTTATGGTGCTGCACGACGCGGCGTCCAGGGGCAACACCATGCTGT TCGACGCGGGGCTGGGCTCGTCGCTCAAGGAAGCGGAAGTCCGGTTGCTCCAGCTGATCGCGAAACTCGGCCTGTCCCCG GTGCGCATCGCCGGCGCCCTGTACTCCAACGAGCTGACGCAGATGCGGCAGTGGATGAAGCTCTACCAGCCTGACCTGAA CAGCCAGGACGACAGCCACTTCAGCATCAAGGCGCTGAAACTGGTGGCCGACGGCTCCAACCAAGGCCTGACCGGCTTCC AGTTCAGCCCCTACAAAAACGTCGCGCAACACCCGGTGCCGGACGTGCCGCCCATCGGCCTGTTCAACTTCAAAATCCCG GATGCCCCCAGCTCGGAGAACGAGAATCGGCTGCCGGACTCTCTGGCAAGTTACCTCCATCTGGCGCTGGGCTCCGGCTG GCCAGTGCTGGTGCACTCCAACGGCGAGCAGGCGATGGAGCTGGTGCTGGACAGCTACCAGGAGGCGATCAGCGCCACCC GCGCCGACGCGCGCCACCTCCGCCTGCGGGTGGAGCACGCCTCGCTTCTCACCGACGCCACCTTGAGCCGCATGGCCAGC ATGGGTCTGTCGCCCAGTTTCCTGATCGGCCACGTCGGCTATTGGGGTTATGCCCTTCAAAACGATATTCTGGGCGAAGC GCGCACGGAGCTGCTGGACCGCTGTAAATCGGCGCGTGACGCCGGTATTCGCATCAGCCTTCATTCCGACCACTTCGTCT CGCCCCTGGGCTCGCTGCGGATGGCGGAGCAGGCGATTTACCGCAAGATGGAAGGCGCGCCGCAAGAGGAAAAGCCCGTG CTGAACAAAGAAGAATGTCTCAGCCATGAACAGGCGCTGGCCGCGGTCACGCTGGACGCGGCCTGGCAATGCCACATGGA TCACCTGGTCGGCTCGCTGGAGCCGGGCAAGCTGGCCGACATGGTGATTCTGGGCCAGGACCCGCTCGACGATGGCGTGA CCGACCTGCGCCACATCAACGTCCATGAAACCTGGCGCGGCGGCGCGAGGGTGTACGCCAATCCCAACACGCATTAA
Upstream 100 bases:
>100_bases GGGCCACTCGCGGGACGGCGCAATCATGCCATGCGATTATCATCAAGCCGTACACGATGCCGGCAAACGGCGCCGGCCCA AACCAAGGAGATGCACTGCC
Downstream 100 bases:
>100_bases TCGCCAACACCCGGCCTGCGCCGGGACCATGCGCGGCCTGTCCTGCAATGGGCAGGCCGCTTGCCATATTTGAACATCAA GCCGTCACCGCCCTAGAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 638; Mature: 637
Protein sequence:
>638_residues MSDHHHHDHHLGCACCALPLLELLDQPQLSQDEWQRELETLAPELGKRFPRPGQQESAIFHGGSIRPLAAAGPSRVAALG MSGGRIVAMGDLDDVRAAMASHRPFREIDLDGRALLPGLVDPHMHIMPSALFKSWISLSAFGVTRNSQDGEDAQVLNPDY SYQQIKDKLLPAIAQAKQPGAASNWVLGFGVDPSLMREWVDIKASSLDELAPPDDNIAVFLLNASGHIGYANTAAMKEAG LTPEQIKKCEGVLTEANIIQIMGKIPKRILAKDLLRNLLMVLHDAASRGNTMLFDAGLGSSLKEAEVRLLQLIAKLGLSP VRIAGALYSNELTQMRQWMKLYQPDLNSQDDSHFSIKALKLVADGSNQGLTGFQFSPYKNVAQHPVPDVPPIGLFNFKIP DAPSSENENRLPDSLASYLHLALGSGWPVLVHSNGEQAMELVLDSYQEAISATRADARHLRLRVEHASLLTDATLSRMAS MGLSPSFLIGHVGYWGYALQNDILGEARTELLDRCKSARDAGIRISLHSDHFVSPLGSLRMAEQAIYRKMEGAPQEEKPV LNKEECLSHEQALAAVTLDAAWQCHMDHLVGSLEPGKLADMVILGQDPLDDGVTDLRHINVHETWRGGARVYANPNTH
Sequences:
>Translated_638_residues MSDHHHHDHHLGCACCALPLLELLDQPQLSQDEWQRELETLAPELGKRFPRPGQQESAIFHGGSIRPLAAAGPSRVAALG MSGGRIVAMGDLDDVRAAMASHRPFREIDLDGRALLPGLVDPHMHIMPSALFKSWISLSAFGVTRNSQDGEDAQVLNPDY SYQQIKDKLLPAIAQAKQPGAASNWVLGFGVDPSLMREWVDIKASSLDELAPPDDNIAVFLLNASGHIGYANTAAMKEAG LTPEQIKKCEGVLTEANIIQIMGKIPKRILAKDLLRNLLMVLHDAASRGNTMLFDAGLGSSLKEAEVRLLQLIAKLGLSP VRIAGALYSNELTQMRQWMKLYQPDLNSQDDSHFSIKALKLVADGSNQGLTGFQFSPYKNVAQHPVPDVPPIGLFNFKIP DAPSSENENRLPDSLASYLHLALGSGWPVLVHSNGEQAMELVLDSYQEAISATRADARHLRLRVEHASLLTDATLSRMAS MGLSPSFLIGHVGYWGYALQNDILGEARTELLDRCKSARDAGIRISLHSDHFVSPLGSLRMAEQAIYRKMEGAPQEEKPV LNKEECLSHEQALAAVTLDAAWQCHMDHLVGSLEPGKLADMVILGQDPLDDGVTDLRHINVHETWRGGARVYANPNTH >Mature_637_residues SDHHHHDHHLGCACCALPLLELLDQPQLSQDEWQRELETLAPELGKRFPRPGQQESAIFHGGSIRPLAAAGPSRVAALGM SGGRIVAMGDLDDVRAAMASHRPFREIDLDGRALLPGLVDPHMHIMPSALFKSWISLSAFGVTRNSQDGEDAQVLNPDYS YQQIKDKLLPAIAQAKQPGAASNWVLGFGVDPSLMREWVDIKASSLDELAPPDDNIAVFLLNASGHIGYANTAAMKEAGL TPEQIKKCEGVLTEANIIQIMGKIPKRILAKDLLRNLLMVLHDAASRGNTMLFDAGLGSSLKEAEVRLLQLIAKLGLSPV RIAGALYSNELTQMRQWMKLYQPDLNSQDDSHFSIKALKLVADGSNQGLTGFQFSPYKNVAQHPVPDVPPIGLFNFKIPD APSSENENRLPDSLASYLHLALGSGWPVLVHSNGEQAMELVLDSYQEAISATRADARHLRLRVEHASLLTDATLSRMASM GLSPSFLIGHVGYWGYALQNDILGEARTELLDRCKSARDAGIRISLHSDHFVSPLGSLRMAEQAIYRKMEGAPQEEKPVL NKEECLSHEQALAAVTLDAAWQCHMDHLVGSLEPGKLADMVILGQDPLDDGVTDLRHINVHETWRGGARVYANPNTH
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 69768; Mature: 69637
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDHHHHDHHLGCACCALPLLELLDQPQLSQDEWQRELETLAPELGKRFPRPGQQESAIF CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE HGGSIRPLAAAGPSRVAALGMSGGRIVAMGDLDDVRAAMASHRPFREIDLDGRALLPGLV ECCCCCCHHCCCCCCEEEEECCCCEEEEECCHHHHHHHHHCCCCCCEECCCCCEECCCCC DPHMHIMPSALFKSWISLSAFGVTRNSQDGEDAQVLNPDYSYQQIKDKLLPAIAQAKQPG CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCC AASNWVLGFGVDPSLMREWVDIKASSLDELAPPDDNIAVFLLNASGHIGYANTAAMKEAG CCCCCEEEECCCHHHHHHHHHHHHHCHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHCC LTPEQIKKCEGVLTEANIIQIMGKIPKRILAKDLLRNLLMVLHDAASRGNTMLFDAGLGS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC SLKEAEVRLLQLIAKLGLSPVRIAGALYSNELTQMRQWMKLYQPDLNSQDDSHFSIKALK CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE LVADGSNQGLTGFQFSPYKNVAQHPVPDVPPIGLFNFKIPDAPSSENENRLPDSLASYLH EEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH LALGSGWPVLVHSNGEQAMELVLDSYQEAISATRADARHLRLRVEHASLLTDATLSRMAS HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHH MGLSPSFLIGHVGYWGYALQNDILGEARTELLDRCKSARDAGIRISLHSDHFVSPLGSLR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCHHHHHH MAEQAIYRKMEGAPQEEKPVLNKEECLSHEQALAAVTLDAAWQCHMDHLVGSLEPGKLAD HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE MVILGQDPLDDGVTDLRHINVHETWRGGARVYANPNTH EEEECCCCCCCCHHHHEECCCHHCCCCCCEEECCCCCC >Mature Secondary Structure SDHHHHDHHLGCACCALPLLELLDQPQLSQDEWQRELETLAPELGKRFPRPGQQESAIF CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE HGGSIRPLAAAGPSRVAALGMSGGRIVAMGDLDDVRAAMASHRPFREIDLDGRALLPGLV ECCCCCCHHCCCCCCEEEEECCCCEEEEECCHHHHHHHHHCCCCCCEECCCCCEECCCCC DPHMHIMPSALFKSWISLSAFGVTRNSQDGEDAQVLNPDYSYQQIKDKLLPAIAQAKQPG CCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCC AASNWVLGFGVDPSLMREWVDIKASSLDELAPPDDNIAVFLLNASGHIGYANTAAMKEAG CCCCCEEEECCCHHHHHHHHHHHHHCHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHCC LTPEQIKKCEGVLTEANIIQIMGKIPKRILAKDLLRNLLMVLHDAASRGNTMLFDAGLGS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC SLKEAEVRLLQLIAKLGLSPVRIAGALYSNELTQMRQWMKLYQPDLNSQDDSHFSIKALK CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEE LVADGSNQGLTGFQFSPYKNVAQHPVPDVPPIGLFNFKIPDAPSSENENRLPDSLASYLH EEECCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH LALGSGWPVLVHSNGEQAMELVLDSYQEAISATRADARHLRLRVEHASLLTDATLSRMAS HHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHH MGLSPSFLIGHVGYWGYALQNDILGEARTELLDRCKSARDAGIRISLHSDHFVSPLGSLR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHCHHHHHH MAEQAIYRKMEGAPQEEKPVLNKEECLSHEQALAAVTLDAAWQCHMDHLVGSLEPGKLAD HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE MVILGQDPLDDGVTDLRHINVHETWRGGARVYANPNTH EEEECCCCCCCCHHHHEECCCHHCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA