| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is map2 [H]
Identifier: 34497789
GI number: 34497789
Start: 2523917
End: 2524708
Strand: Direct
Name: map2 [H]
Synonym: CV_2334
Alternate gene names: 34497789
Gene position: 2523917-2524708 (Clockwise)
Preceding gene: 34497788
Following gene: 34497790
Centisome position: 53.12
GC content: 64.27
Gene sequence:
>792_bases ATGAGCCGGGTGGTGATCAAGTCTCCGGCCGAGGTGGCCAAGGCGCGCGAGGCGGGCAAGCTGGTGGCGGAACTGCTGGC GATGATAGGCGAGCACGTGAAGCCCGGCGTCAGCACCGAAGAACTGGATGCGCGCTGCAATGAATACATCGTCAAGGTGC AGAAGGCCAAGCCGGCCAATGTCGGCTATTACGGCTATCCCAAGACCATCTGCTCCTCGGTCAACCAAGTGGTGTGCCAC GGCATTCCATCGGCAAAGCAGATCCTGCGCGACGGCGACATCGTCAACATAGACGTGGCGGTGATCAAGAACGGCTGGCA TGGCGACAGCAGCCGGATGTTCTATGTGGGCAGGCCAAGCGCGGAGGCGAAGCGGCTGGTGGAAACCTGCTACGACGCCA CTTGCGCCGGCATCCGCGCGGTGCGCCCTGGCGCCACGCTGGGCGACATCGGCCACGCGATCCAGGCCATCACCGAATCC GCGGGCTTCAGCGTGGTGCGCGAGTACTGCGGCCACGGCATCGGCAAGGTCTATCACGAGGAGCCCGAGGTCTTGCATTA CGGCCGTCCCGGCATAGGCATGAAGCTGAAACGCGGCATGGTGTTCACCATCGAGCCGATGATCAATGCCGGCAAGGCCG GCACCCGCCAGCTGGGCGATGGCTGGACGGTGGTGACGCAAGACGGGTCGTGGTCGGCGCAGTGGGAGCATATGGTGGCG GTGACCGATCATGGCTTCGAAGTGCTGACGCCGTGGCCGGACGGCCTGGGCGATTATCCGGCGATCGCTTGA
Upstream 100 bases:
>100_bases ATCCGGATTTGCGCTACAGCGAGATTTGCCAGCTGCTGCTGAAAGCGGGCCAGGATGGCGGCGGCCTGGATTTGCGACGC CAGGCGATGGAGAGCGCGCG
Downstream 100 bases:
>100_bases GCGATGGCGCGTTCCGAACGCTTGCTGGCGCTGCTGCAGCTGCTGCGCCGCTATCGCCGTCCGGTGACGGCGCAGACGCT GGCCGACGAGCTGGATGTCA
Product: methionyl aminopeptidase
Products: NA
Alternate protein names: MAP; Peptidase M [H]
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MSRVVIKSPAEVAKAREAGKLVAELLAMIGEHVKPGVSTEELDARCNEYIVKVQKAKPANVGYYGYPKTICSSVNQVVCH GIPSAKQILRDGDIVNIDVAVIKNGWHGDSSRMFYVGRPSAEAKRLVETCYDATCAGIRAVRPGATLGDIGHAIQAITES AGFSVVREYCGHGIGKVYHEEPEVLHYGRPGIGMKLKRGMVFTIEPMINAGKAGTRQLGDGWTVVTQDGSWSAQWEHMVA VTDHGFEVLTPWPDGLGDYPAIA
Sequences:
>Translated_263_residues MSRVVIKSPAEVAKAREAGKLVAELLAMIGEHVKPGVSTEELDARCNEYIVKVQKAKPANVGYYGYPKTICSSVNQVVCH GIPSAKQILRDGDIVNIDVAVIKNGWHGDSSRMFYVGRPSAEAKRLVETCYDATCAGIRAVRPGATLGDIGHAIQAITES AGFSVVREYCGHGIGKVYHEEPEVLHYGRPGIGMKLKRGMVFTIEPMINAGKAGTRQLGDGWTVVTQDGSWSAQWEHMVA VTDHGFEVLTPWPDGLGDYPAIA >Mature_262_residues SRVVIKSPAEVAKAREAGKLVAELLAMIGEHVKPGVSTEELDARCNEYIVKVQKAKPANVGYYGYPKTICSSVNQVVCHG IPSAKQILRDGDIVNIDVAVIKNGWHGDSSRMFYVGRPSAEAKRLVETCYDATCAGIRAVRPGATLGDIGHAIQAITESA GFSVVREYCGHGIGKVYHEEPEVLHYGRPGIGMKLKRGMVFTIEPMINAGKAGTRQLGDGWTVVTQDGSWSAQWEHMVAV TDHGFEVLTPWPDGLGDYPAIA
Specific function: Removes the amino-terminal methionine from nascent proteins [H]
COG id: COG0024
COG function: function code J; Methionine aminopeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24A family [H]
Homologues:
Organism=Homo sapiens, GI164420681, Length=249, Percent_Identity=42.570281124498, Blast_Score=211, Evalue=4e-55, Organism=Homo sapiens, GI40385867, Length=250, Percent_Identity=40.4, Blast_Score=196, Evalue=2e-50, Organism=Escherichia coli, GI1786364, Length=251, Percent_Identity=56.1752988047809, Blast_Score=298, Evalue=2e-82, Organism=Escherichia coli, GI1788728, Length=255, Percent_Identity=27.843137254902, Blast_Score=65, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71996291, Length=242, Percent_Identity=42.1487603305785, Blast_Score=192, Evalue=2e-49, Organism=Saccharomyces cerevisiae, GI6323273, Length=251, Percent_Identity=41.0358565737052, Blast_Score=207, Evalue=2e-54, Organism=Drosophila melanogaster, GI21355531, Length=249, Percent_Identity=41.3654618473896, Blast_Score=198, Evalue=3e-51, Organism=Drosophila melanogaster, GI24583427, Length=247, Percent_Identity=40.4858299595142, Blast_Score=188, Evalue=3e-48,
Paralogues:
None
Copy number: 3,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR002467 [H]
Pfam domain/function: PF00557 Peptidase_M24 [H]
EC number: =3.4.11.18 [H]
Molecular weight: Translated: 28390; Mature: 28259
Theoretical pI: Translated: 7.25; Mature: 7.25
Prosite motif: PS00680 MAP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVVIKSPAEVAKAREAGKLVAELLAMIGEHVKPGVSTEELDARCNEYIVKVQKAKPAN CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEHCCCCCCC VGYYGYPKTICSSVNQVVCHGIPSAKQILRDGDIVNIDVAVIKNGWHGDSSRMFYVGRPS CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEEEEECCCCCCCCCEEEEECCC AEAKRLVETCYDATCAGIRAVRPGATLGDIGHAIQAITESAGFSVVREYCGHGIGKVYHE HHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCC EPEVLHYGRPGIGMKLKRGMVFTIEPMINAGKAGTRQLGDGWTVVTQDGSWSAQWEHMVA CCCEEECCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEE VTDHGFEVLTPWPDGLGDYPAIA EECCCCEEECCCCCCCCCCCCCC >Mature Secondary Structure SRVVIKSPAEVAKAREAGKLVAELLAMIGEHVKPGVSTEELDARCNEYIVKVQKAKPAN CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEHCCCCCCC VGYYGYPKTICSSVNQVVCHGIPSAKQILRDGDIVNIDVAVIKNGWHGDSSRMFYVGRPS CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEEEEECCCCCCCCCEEEEECCC AEAKRLVETCYDATCAGIRAVRPGATLGDIGHAIQAITESAGFSVVREYCGHGIGKVYHE HHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHCC EPEVLHYGRPGIGMKLKRGMVFTIEPMINAGKAGTRQLGDGWTVVTQDGSWSAQWEHMVA CCCEEECCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEE VTDHGFEVLTPWPDGLGDYPAIA EECCCCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]