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The map label for this gene is yddU [C]

Identifier: 34497670

GI number: 34497670

Start: 2385158

End: 2386366

Strand: Reverse

Name: yddU [C]

Synonym: CV_2215

Alternate gene names: 34497670

Gene position: 2386366-2385158 (Counterclockwise)

Preceding gene: 34497671

Following gene: 34497669

Centisome position: 50.23

GC content: 64.27

Gene sequence:

>1209_bases
ATGCACCAGATACTGGTCGTAGACGACGATGCCGTATCGCAGCAATTCCTCGTGATGGTGTTGCAACGCCTCGGCTACGC
AAACGTGGTCGTCGCCAGCGACGGCCTCGATGCGTTGATCCAGCTCGATGCCGGCGACCGCCGTTTCGACGTGATCTTCT
GCGACCTGGACATGCCGCGCATGGACGGCATCGAATTCGTCCGCCACCTCGGCGAGCGCGCTTTTCAGGGCAAGCTGCTG
ATTTCCAGCGGATTCGACGAGCGCGTGCTGGAATCGGTGGCGGAACTCGCCCGCATGTACGATCTGTGGCTGGCCGGCGT
GCTGCCCAAGCCCATCAACCACCAGGCGCTGCAACGCCTGATCAACCAGGCTCCGCCCGCCTCTCGCCATCCGACCCACG
CCGTGGCGCCGCCCACCGAGGACGAATTGCGCGCCGCCATCGGCAAGGGCGAGATCCGTCCTTTTCTTCAACCCCAGGTC
TTGCTGGCCGACGGACGAATCCGGTCGGCGGAAGTGCTTGCGCGCTGGCAGCATCCCCGCCTCGGGCTGATCGGCCCCCA
GCAATTCATCCAGCTGGCGGAACACTCCAGCCTGATCACCGAGCTGACCCTGCAATTGCTGAAGCAGGCGGCCGCCTCGA
TGGACAGGCTGCCCAGCGAGACGCCGATGGAGATGTCGCTCAATCTGTCGGTGGCGTCGCTGAACGAGATCGCCCTGGTC
TCCCAGTTCGAACGGATACTCAACGACTGCGGCTTTCCCTTCAGCCGCCTGACCGTCGAAGTGACCGAAACCGGCCTGAT
GGCCAACCCGACCCGCGCGCTGGAGCTGCTGACCCGCTTGCGGCTGAAAGGCGCGCGGCTGGCGATAGACGACTTCGGGA
CGGGCTTCGCCAGCATGGATAGGCTGTCGCGCATTCCCTTTACCGAGTTGAAGATAGACAAGAGCTTCGTCATCGACGCC
GCCCGCAACCCCACCAATCTATCCATCGTGCGCGCCAGCGCCGAGCTCGGCCGGCAACTGGGGCTGGTCGTGGTGGCGGA
AGGCGTGGCGACGGAGTCGGAATGGCGGCTATGCCAGCAACTGGACGTGGAAATCGTCCAGGGGTCGTTCATTTCGCCGC
CGGTGGATGCGGAAAGCTTCCGCCGTTGGCTGCTGAAACACCGCGGCGTATTCCTGCGCGCCGCGCCCGATCTTTCAGAT
ACCGGTTGA

Upstream 100 bases:

>100_bases
AGCTGAGCACCTGCCCGGGCGGCCCCGTTTCCACCCGGAAGTCCGACACTATAATTGCAGCATCCACACCATATGACCAG
CTGGCGTCATGGGAGAGGCG

Downstream 100 bases:

>100_bases
AAGCCCGAATGCAAAGGAGCCTAGCCATGCCCGCCCTCAGCCGCGCCATTGCGATCTTGCTGTTCCTGGCCGTCTCCCTG
TGCCACGCCGAAAGCCCCCA

Product: response regulator receiver domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MHQILVVDDDAVSQQFLVMVLQRLGYANVVVASDGLDALIQLDAGDRRFDVIFCDLDMPRMDGIEFVRHLGERAFQGKLL
ISSGFDERVLESVAELARMYDLWLAGVLPKPINHQALQRLINQAPPASRHPTHAVAPPTEDELRAAIGKGEIRPFLQPQV
LLADGRIRSAEVLARWQHPRLGLIGPQQFIQLAEHSSLITELTLQLLKQAAASMDRLPSETPMEMSLNLSVASLNEIALV
SQFERILNDCGFPFSRLTVEVTETGLMANPTRALELLTRLRLKGARLAIDDFGTGFASMDRLSRIPFTELKIDKSFVIDA
ARNPTNLSIVRASAELGRQLGLVVVAEGVATESEWRLCQQLDVEIVQGSFISPPVDAESFRRWLLKHRGVFLRAAPDLSD
TG

Sequences:

>Translated_402_residues
MHQILVVDDDAVSQQFLVMVLQRLGYANVVVASDGLDALIQLDAGDRRFDVIFCDLDMPRMDGIEFVRHLGERAFQGKLL
ISSGFDERVLESVAELARMYDLWLAGVLPKPINHQALQRLINQAPPASRHPTHAVAPPTEDELRAAIGKGEIRPFLQPQV
LLADGRIRSAEVLARWQHPRLGLIGPQQFIQLAEHSSLITELTLQLLKQAAASMDRLPSETPMEMSLNLSVASLNEIALV
SQFERILNDCGFPFSRLTVEVTETGLMANPTRALELLTRLRLKGARLAIDDFGTGFASMDRLSRIPFTELKIDKSFVIDA
ARNPTNLSIVRASAELGRQLGLVVVAEGVATESEWRLCQQLDVEIVQGSFISPPVDAESFRRWLLKHRGVFLRAAPDLSD
TG
>Mature_402_residues
MHQILVVDDDAVSQQFLVMVLQRLGYANVVVASDGLDALIQLDAGDRRFDVIFCDLDMPRMDGIEFVRHLGERAFQGKLL
ISSGFDERVLESVAELARMYDLWLAGVLPKPINHQALQRLINQAPPASRHPTHAVAPPTEDELRAAIGKGEIRPFLQPQV
LLADGRIRSAEVLARWQHPRLGLIGPQQFIQLAEHSSLITELTLQLLKQAAASMDRLPSETPMEMSLNLSVASLNEIALV
SQFERILNDCGFPFSRLTVEVTETGLMANPTRALELLTRLRLKGARLAIDDFGTGFASMDRLSRIPFTELKIDKSFVIDA
ARNPTNLSIVRASAELGRQLGLVVVAEGVATESEWRLCQQLDVEIVQGSFISPPVDAESFRRWLLKHRGVFLRAAPDLSD
TG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=244, Percent_Identity=33.1967213114754, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1786507, Length=277, Percent_Identity=33.9350180505415, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787541, Length=252, Percent_Identity=31.7460317460317, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=34.7107438016529, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=29.9595141700405, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=31.3008130081301, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=28.8617886178862, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787055, Length=237, Percent_Identity=31.2236286919831, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=27.0491803278689, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI226510982, Length=256, Percent_Identity=30.859375, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87082096, Length=241, Percent_Identity=28.6307053941909, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788849, Length=205, Percent_Identity=29.2682926829268, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 44578; Mature: 44578

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQILVVDDDAVSQQFLVMVLQRLGYANVVVASDGLDALIQLDAGDRRFDVIFCDLDMPR
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCCCC
MDGIEFVRHLGERAFQGKLLISSGFDERVLESVAELARMYDLWLAGVLPKPINHQALQRL
CCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
INQAPPASRHPTHAVAPPTEDELRAAIGKGEIRPFLQPQVLLADGRIRSAEVLARWQHPR
HHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCC
LGLIGPQQFIQLAEHSSLITELTLQLLKQAAASMDRLPSETPMEMSLNLSVASLNEIALV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHH
SQFERILNDCGFPFSRLTVEVTETGLMANPTRALELLTRLRLKGARLAIDDFGTGFASMD
HHHHHHHHHCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHH
RLSRIPFTELKIDKSFVIDAARNPTNLSIVRASAELGRQLGLVVVAEGVATESEWRLCQQ
HHHCCCCHHEEECHHHEEECCCCCCCEEEEECCHHHHHHCCEEEEECCCCCCHHHHHHHH
LDVEIVQGSFISPPVDAESFRRWLLKHRGVFLRAAPDLSDTG
HCHHHCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCC
>Mature Secondary Structure
MHQILVVDDDAVSQQFLVMVLQRLGYANVVVASDGLDALIQLDAGDRRFDVIFCDLDMPR
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCEEEEEEEECCCCC
MDGIEFVRHLGERAFQGKLLISSGFDERVLESVAELARMYDLWLAGVLPKPINHQALQRL
CCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
INQAPPASRHPTHAVAPPTEDELRAAIGKGEIRPFLQPQVLLADGRIRSAEVLARWQHPR
HHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCC
LGLIGPQQFIQLAEHSSLITELTLQLLKQAAASMDRLPSETPMEMSLNLSVASLNEIALV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHH
SQFERILNDCGFPFSRLTVEVTETGLMANPTRALELLTRLRLKGARLAIDDFGTGFASMD
HHHHHHHHHCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHH
RLSRIPFTELKIDKSFVIDAARNPTNLSIVRASAELGRQLGLVVVAEGVATESEWRLCQQ
HHHCCCCHHEEECHHHEEECCCCCCCEEEEECCHHHHHHCCEEEEECCCCCCHHHHHHHH
LDVEIVQGSFISPPVDAESFRRWLLKHRGVFLRAAPDLSDTG
HCHHHCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]