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The map label for this gene is rdgB [H]

Identifier: 34497620

GI number: 34497620

Start: 2338809

End: 2339162

Strand: Direct

Name: rdgB [H]

Synonym: CV_2165

Alternate gene names: 34497620

Gene position: 2338809-2339162 (Clockwise)

Preceding gene: 34497619

Following gene: 34497621

Centisome position: 49.23

GC content: 59.6

Gene sequence:

>354_bases
ATGAAGCCCATCCATACCCGCAGCAAAGGCCCTGAGCTGCTGTCCGACCTGGCCGACCACATCGCCGAGGCTCTGCAGGA
GCTGGCCAGCATTGAACGCGAGATCGGTGAGCAGCTGGGCAGCGAGATCGCCAACCGGATGGCCGCGCACTGGGGAGGCC
AGAACATCTATTTCCCGATGGGACTGTCGGTCAGGTTGTCGAAACGGGACCGGAAGATATTCGAGGAATTCACCGGAGAC
AACCACGGCGACTTGGCGCGCAAGTACGGTGTCAGCCTGCAGTGGATTTACAAGATAGTGAAGGCTGTCCGGCGTGAGGA
AATGGAGAGTCGCCAGGGCGATATGTTCAGCTGA

Upstream 100 bases:

>100_bases
TGAATCAGCTGATGAATACGGCCATGGCGCGTAAAACGTTCGACCCGATGTTGAGCGCCTGGGAAAGCCTGACCGCCATC
CTCAAGGCGAAGGAGGAAGC

Downstream 100 bases:

>100_bases
AAGTGGTGGGCCAACCGGCTCACCACCCTTTGCAATACGTGAAATAGATTTTCAGACCGCCGTCCATCCTCTTCCCGTAT
CATCCCAGCTGTTCCCGATT

Product: bacteriophage transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MKPIHTRSKGPELLSDLADHIAEALQELASIEREIGEQLGSEIANRMAAHWGGQNIYFPMGLSVRLSKRDRKIFEEFTGD
NHGDLARKYGVSLQWIYKIVKAVRREEMESRQGDMFS

Sequences:

>Translated_117_residues
MKPIHTRSKGPELLSDLADHIAEALQELASIEREIGEQLGSEIANRMAAHWGGQNIYFPMGLSVRLSKRDRKIFEEFTGD
NHGDLARKYGVSLQWIYKIVKAVRREEMESRQGDMFS
>Mature_117_residues
MKPIHTRSKGPELLSDLADHIAEALQELASIEREIGEQLGSEIANRMAAHWGGQNIYFPMGLSVRLSKRDRKIFEEFTGD
NHGDLARKYGVSLQWIYKIVKAVRREEMESRQGDMFS

Specific function: Regulates pectin lyase production in response to DNA damage [H]

COG id: COG5566

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the c/mor transcriptional regulatory family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR014875 [H]

Pfam domain/function: PF08765 Mor [H]

EC number: NA

Molecular weight: Translated: 13389; Mature: 13389

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIHTRSKGPELLSDLADHIAEALQELASIEREIGEQLGSEIANRMAAHWGGQNIYFPM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
GLSVRLSKRDRKIFEEFTGDNHGDLARKYGVSLQWIYKIVKAVRREEMESRQGDMFS
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKPIHTRSKGPELLSDLADHIAEALQELASIEREIGEQLGSEIANRMAAHWGGQNIYFPM
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
GLSVRLSKRDRKIFEEFTGDNHGDLARKYGVSLQWIYKIVKAVRREEMESRQGDMFS
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7715460 [H]