| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34497570
Identifier: 34497570
GI number: 34497570
Start: 2303969
End: 2305075
Strand: Reverse
Name: 34497570
Synonym: CV_2115
Alternate gene names: NA
Gene position: 2305075-2303969 (Counterclockwise)
Preceding gene: 34497571
Following gene: 34497569
Centisome position: 48.52
GC content: 65.85
Gene sequence:
>1107_bases GTGACACTGCCCGAACCCGACTTCATCGCGCGCGACCCTGCAGTCATCACGGCCGAGCTCATCGCTCAGTACGAGCAGAT GAGCGGTAAGACGCTGTACCCGGCCCAGGTGGAGCGGCTGCTGATCGACCTGATGGCCTACCGCGAAACGCTGGTCCGTG TAGGCATTCAGGAAGCGGCCAAGCAGAACCTGGTGGCCTACGCCCGCGCGCCGATGCTGGACTACCTTGGCCAACTGGTG GGCGTCACCCGCCTACCGGCCCAGCCCGCCCGAGCTACGCTGCGTTTTACCTTGGATGCGCCGCTGGCCAGTCCGTTACC AATCCCGGCCGGCACCCGAGTGGAAAGCGGCGACGGTGTCGTGGCCTTCGCCACCGACGAGGCGGCAACGCTGCCTGCCG GCCGCACATCGCTTGAGATCGCCGCCACCTGCCAGGATGCCGGCAGCGCTGGCAACGGCTGGCAGCCTGGCCAGATCGTC AACCTGATGGACGACCTGGGCGACATGGACGTGGTGGTGACCAACACCGCGGTGACGGCAGGTGGCGTGGACGAAGAGGA CGACGAACGGTTGCGCGAGCGCATCATGCTGGCGCCGGAGTCATTCTCCAATGCCGGCAGCCGCCAAGCCTACCGTTTCC ACGCGCTGCGCGCGCACCAGAGCATTGTCGACGTGGCTGTACTGTCGCCCACGCCTGGCGTGGTCCAGCTCTACCCGCTG CTGAAAACCGGCTTGCCGGACGCCAACATGCTCGCTCTGGTGCAAGCCACCTGCTCGGCCGAGCGAGTACGGCCGCTGAC TGATTATGTGGAGGCACTGGCGCCAACGGCTATCGACTACGCCATCGATGTCCGCCTAACGGTATACCCGGATGTGGATG GCAAGGCAGTGAAGACGCAAGCCCAGGAGCGGCTGCAGGCGTATGCCGCAGAGCGCGCTGGCGCGCTGGGACGCGATATT GTCCCCAGCCAGATCATTGCAGCCGTCCAGGTGCCAGGCGTGTACCAGGCAACAGTGGCCAGCCCTGGCTTGCAGCAGGT ACCGGAGCATGGCTGGGCACGTTGCACGGGTGTCAGCGTGACGCTAGAGGGGGTGAGCCATGGTTGA
Upstream 100 bases:
>100_bases GCCAGCTGGTGAAGGTGACGCCGTTGATCGACGGCGCCCGCATCATCCTCCGCGTGACCTGGCGCATAGCCGCAGGCGTG CGGGAAACGGAGGTGCGGCT
Downstream 100 bases:
>100_bases TCTGCCGCTGCCGCCCGCACTGGCCGGCGACGAGAGGATGCGCACACTTGCAGCATTGAGCGCCCGCATCAGCGCGGTCG AGCTGTCGCCGTTGCTGGTC
Product: bacteriophage tail fiber protein
Products: NA
Alternate protein names: Baseplate Assembly Protein J; Bacteriophage Baseplate Assembly Protein; Bacteriophage Tail Fiber Protein; Phage Baseplate Assembly Protein; Baseplate J-Like Protein; Phage-Related Baseplate Assembly Protein; Phage Baseplate Protein; Phage Baseplate J-Like Protein; Phage Baseplate Assembly Protein J; Prophage; Phage Tail-Like Protein; Bacteriophage Protein; Phage P2 Baseplate Assembly GpJ-Like Protein; Prophage Baseplate Assembly Protein; Bacteriophage P2 Baseplate Assembly Protein GPJ; Baseplate Assembly Protein; Bacteriophage Baseplate Protein; Phage Baseplate Assembly Protein GpJ; Bacteriophage Baseplate Assembly Protein J; Phage Baseplate-Like Protein
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MTLPEPDFIARDPAVITAELIAQYEQMSGKTLYPAQVERLLIDLMAYRETLVRVGIQEAAKQNLVAYARAPMLDYLGQLV GVTRLPAQPARATLRFTLDAPLASPLPIPAGTRVESGDGVVAFATDEAATLPAGRTSLEIAATCQDAGSAGNGWQPGQIV NLMDDLGDMDVVVTNTAVTAGGVDEEDDERLRERIMLAPESFSNAGSRQAYRFHALRAHQSIVDVAVLSPTPGVVQLYPL LKTGLPDANMLALVQATCSAERVRPLTDYVEALAPTAIDYAIDVRLTVYPDVDGKAVKTQAQERLQAYAAERAGALGRDI VPSQIIAAVQVPGVYQATVASPGLQQVPEHGWARCTGVSVTLEGVSHG
Sequences:
>Translated_368_residues MTLPEPDFIARDPAVITAELIAQYEQMSGKTLYPAQVERLLIDLMAYRETLVRVGIQEAAKQNLVAYARAPMLDYLGQLV GVTRLPAQPARATLRFTLDAPLASPLPIPAGTRVESGDGVVAFATDEAATLPAGRTSLEIAATCQDAGSAGNGWQPGQIV NLMDDLGDMDVVVTNTAVTAGGVDEEDDERLRERIMLAPESFSNAGSRQAYRFHALRAHQSIVDVAVLSPTPGVVQLYPL LKTGLPDANMLALVQATCSAERVRPLTDYVEALAPTAIDYAIDVRLTVYPDVDGKAVKTQAQERLQAYAAERAGALGRDI VPSQIIAAVQVPGVYQATVASPGLQQVPEHGWARCTGVSVTLEGVSHG >Mature_367_residues TLPEPDFIARDPAVITAELIAQYEQMSGKTLYPAQVERLLIDLMAYRETLVRVGIQEAAKQNLVAYARAPMLDYLGQLVG VTRLPAQPARATLRFTLDAPLASPLPIPAGTRVESGDGVVAFATDEAATLPAGRTSLEIAATCQDAGSAGNGWQPGQIVN LMDDLGDMDVVVTNTAVTAGGVDEEDDERLRERIMLAPESFSNAGSRQAYRFHALRAHQSIVDVAVLSPTPGVVQLYPLL KTGLPDANMLALVQATCSAERVRPLTDYVEALAPTAIDYAIDVRLTVYPDVDGKAVKTQAQERLQAYAAERAGALGRDIV PSQIIAAVQVPGVYQATVASPGLQQVPEHGWARCTGVSVTLEGVSHG
Specific function: Unknown
COG id: COG3948
COG function: function code R; Phage-related baseplate assembly protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39151; Mature: 39020
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPEPDFIARDPAVITAELIAQYEQMSGKTLYPAQVERLLIDLMAYRETLVRVGIQEAA CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH KQNLVAYARAPMLDYLGQLVGVTRLPAQPARATLRFTLDAPLASPLPIPAGTRVESGDGV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCE VAFATDEAATLPAGRTSLEIAATCQDAGSAGNGWQPGQIVNLMDDLGDMDVVVTNTAVTA EEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECEEEE GGVDEEDDERLRERIMLAPESFSNAGSRQAYRFHALRAHQSIVDVAVLSPTPGVVQLYPL CCCCCCHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCEEHHHH LKTGLPDANMLALVQATCSAERVRPLTDYVEALAPTAIDYAIDVRLTVYPDVDGKAVKTQ HHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEEEEEEEEEEECCCCCHHHHHH AQERLQAYAAERAGALGRDIVPSQIIAAVQVPGVYQATVASPGLQQVPEHGWARCTGVSV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEHHCCCCHHHHCCCCCEEEECEEE TLEGVSHG EECCCCCC >Mature Secondary Structure TLPEPDFIARDPAVITAELIAQYEQMSGKTLYPAQVERLLIDLMAYRETLVRVGIQEAA CCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH KQNLVAYARAPMLDYLGQLVGVTRLPAQPARATLRFTLDAPLASPLPIPAGTRVESGDGV HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCE VAFATDEAATLPAGRTSLEIAATCQDAGSAGNGWQPGQIVNLMDDLGDMDVVVTNTAVTA EEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECEEEE GGVDEEDDERLRERIMLAPESFSNAGSRQAYRFHALRAHQSIVDVAVLSPTPGVVQLYPL CCCCCCHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCEEHHHH LKTGLPDANMLALVQATCSAERVRPLTDYVEALAPTAIDYAIDVRLTVYPDVDGKAVKTQ HHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEEEEEEEEEEECCCCCHHHHHH AQERLQAYAAERAGALGRDIVPSQIIAAVQVPGVYQATVASPGLQQVPEHGWARCTGVSV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEHHCCCCHHHHCCCCCEEEECEEE TLEGVSHG EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA