| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34497473
Identifier: 34497473
GI number: 34497473
Start: 2199309
End: 2200256
Strand: Reverse
Name: 34497473
Synonym: CV_2018
Alternate gene names: NA
Gene position: 2200256-2199309 (Counterclockwise)
Preceding gene: 34497474
Following gene: 34497472
Centisome position: 46.31
GC content: 63.4
Gene sequence:
>948_bases GTGGCGTGCCAGCATGCAGCGAATCTACAGACTTGCCGTTGTCGGCCTGGCATGGCCGGCGTCCTTTGTCCATGCGGCGG AAAGCCACTCCGTCTGCGCATCCGGCCCGCTCAAAGAAGGCTGGGCGGCAATACAAAGGTGATATACGACATGCGGCGAA ACATCCGGCTCTTGCTTGTCCTGCTCTTCTCCACGGCCTGTCAGGCAGCGGCCATTCCCGCCTGCCCCAACGGCCCGCTC AAGATCGGCTACTACAAGATCGGCGCCGCTTACCGCGACGGGAAGGGCTACGACGTCGACATGGTGCGCGAGCTTGCCCG TCGGCTGGGCTGCCCCATCGCCAACGAAACCGAACTCCCCCGGCTGCGCGCGCTCAAGATGCTGGAAACCGGGCAGATAG ACGTCAGCGCCTCCACGCTGGCCACGCCCGATCGGCTGCAGTATGCGTGGATCTACCAATACAACCATGCCAAGAACATG GTGCTGCTCAACCCGGCCATCCAGGCCAGGACGCTGGCCACGCTGCTCGAAGACCCGGCCTTGCGCTGGGGCGCGATACG CGGCTACCACCACGGCCCGTCGCAGGACAAACTGCTGGAAGAGCTGAACGCCCGCCACAAGGTGGTGATCGCCAACGACG AAGACGATCTGTACAAGATGCTGGGCAACGGCGTGGTCACCGCCGTCTTCGCCCAGCCGTTCAGCTACGGCCGCTGGTTG CGCGAGCTGCCTAACCCCAACCAGATCGTGGTGCTGGACCTGTACCCGGAGACCGACATGGTCGCCAGCGGCCTGGCGCT GAGCAAAGCCCGGTTCAGCCGCGAAGCGGCGGAAAAATGGCACCAGGAGCTGCTCAAGATGTACCAGGACGGCAGCCTGT ACGACATCATGCGCCGCTATCTGAATGAGAGCGCCGCCAGGCAGATGATGCAGAAACCGATAGAATGA
Upstream 100 bases:
>100_bases TTGAGACTGTTGCGCCAGGCATGGCAAACGCCTTTGTCGCCGGCAGTCGGAGGTAGCGCCCTCCGGCGGCATGGCTATTA TTGAAATCAAAGGCTTCCGG
Downstream 100 bases:
>100_bases CAATGCTCAAACTTCCGCTTGGCCGGCTGGCCCGCCTGCTCATTCCCGCCCTTTTCCCGCTGGTCGCGCAGGCCAATCCC GCTTGCCCCCAGGGTCCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MACQHAANLQTCRCRPGMAGVLCPCGGKPLRLRIRPAQRRLGGNTKVIYDMRRNIRLLLVLLFSTACQAAAIPACPNGPL KIGYYKIGAAYRDGKGYDVDMVRELARRLGCPIANETELPRLRALKMLETGQIDVSASTLATPDRLQYAWIYQYNHAKNM VLLNPAIQARTLATLLEDPALRWGAIRGYHHGPSQDKLLEELNARHKVVIANDEDDLYKMLGNGVVTAVFAQPFSYGRWL RELPNPNQIVVLDLYPETDMVASGLALSKARFSREAAEKWHQELLKMYQDGSLYDIMRRYLNESAARQMMQKPIE
Sequences:
>Translated_315_residues MACQHAANLQTCRCRPGMAGVLCPCGGKPLRLRIRPAQRRLGGNTKVIYDMRRNIRLLLVLLFSTACQAAAIPACPNGPL KIGYYKIGAAYRDGKGYDVDMVRELARRLGCPIANETELPRLRALKMLETGQIDVSASTLATPDRLQYAWIYQYNHAKNM VLLNPAIQARTLATLLEDPALRWGAIRGYHHGPSQDKLLEELNARHKVVIANDEDDLYKMLGNGVVTAVFAQPFSYGRWL RELPNPNQIVVLDLYPETDMVASGLALSKARFSREAAEKWHQELLKMYQDGSLYDIMRRYLNESAARQMMQKPIE >Mature_314_residues ACQHAANLQTCRCRPGMAGVLCPCGGKPLRLRIRPAQRRLGGNTKVIYDMRRNIRLLLVLLFSTACQAAAIPACPNGPLK IGYYKIGAAYRDGKGYDVDMVRELARRLGCPIANETELPRLRALKMLETGQIDVSASTLATPDRLQYAWIYQYNHAKNMV LLNPAIQARTLATLLEDPALRWGAIRGYHHGPSQDKLLEELNARHKVVIANDEDDLYKMLGNGVVTAVFAQPFSYGRWLR ELPNPNQIVVLDLYPETDMVASGLALSKARFSREAAEKWHQELLKMYQDGSLYDIMRRYLNESAARQMMQKPIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35500; Mature: 35369
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: PS00022 EGF_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MACQHAANLQTCRCRPGMAGVLCPCGGKPLRLRIRPAQRRLGGNTKVIYDMRRNIRLLLV CCCCCCCCCCEEECCCCCCCEEECCCCCEEEEEEEHHHHHCCCCCEEEEEHHHHHHHHHH LLFSTACQAAAIPACPNGPLKIGYYKIGAAYRDGKGYDVDMVRELARRLGCPIANETELP HHHHHHHHHHCCCCCCCCCEEEEEEEECCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC RLRALKMLETGQIDVSASTLATPDRLQYAWIYQYNHAKNMVLLNPAIQARTLATLLEDPA HHHHHHHHHCCCEEECHHHCCCCCCEEEEEEEEECCCCCEEEECCCHHHHHHHHHHHCCC LRWGAIRGYHHGPSQDKLLEELNARHKVVIANDEDDLYKMLGNGVVTAVFAQPFSYGRWL HHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCEEEHHHCCHHHHHHH RELPNPNQIVVLDLYPETDMVASGLALSKARFSREAAEKWHQELLKMYQDGSLYDIMRRY HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LNESAARQMMQKPIE HCHHHHHHHHHCCCC >Mature Secondary Structure ACQHAANLQTCRCRPGMAGVLCPCGGKPLRLRIRPAQRRLGGNTKVIYDMRRNIRLLLV CCCCCCCCCEEECCCCCCCEEECCCCCEEEEEEEHHHHHCCCCCEEEEEHHHHHHHHHH LLFSTACQAAAIPACPNGPLKIGYYKIGAAYRDGKGYDVDMVRELARRLGCPIANETELP HHHHHHHHHHCCCCCCCCCEEEEEEEECCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCC RLRALKMLETGQIDVSASTLATPDRLQYAWIYQYNHAKNMVLLNPAIQARTLATLLEDPA HHHHHHHHHCCCEEECHHHCCCCCCEEEEEEEEECCCCCEEEECCCHHHHHHHHHHHCCC LRWGAIRGYHHGPSQDKLLEELNARHKVVIANDEDDLYKMLGNGVVTAVFAQPFSYGRWL HHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCEEEHHHCCHHHHHHH RELPNPNQIVVLDLYPETDMVASGLALSKARFSREAAEKWHQELLKMYQDGSLYDIMRRY HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LNESAARQMMQKPIE HCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA