| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34497468
Identifier: 34497468
GI number: 34497468
Start: 2193653
End: 2196067
Strand: Reverse
Name: 34497468
Synonym: CV_2013
Alternate gene names: NA
Gene position: 2196067-2193653 (Counterclockwise)
Preceding gene: 34497469
Following gene: 34497467
Centisome position: 46.22
GC content: 68.41
Gene sequence:
>2415_bases ATGTGGTCGACTGCTGCAGTTCAAGGCGGGAAGCTCCCGTTTCCTCAACCGTTGTTTGATTACTGGCTGGACGCCTGCCA GCGCGGCGTCCTGTACTGGGATACGCTGTACCGGCGCGGCGCCACCTATCTGGAGCACTGCGAGAGCGGCAAGCCGCCGG TGCTGGTCTTCGACTACCGTATCATCATGGACGGCAGGGAACTCCCCGACCCGGCCAACTACGCGCTGGCGGCCATCGTG CCGCCCGCAGCCTGCCCGCCCACCGATCCCGCCAAGCGCCCCTTCGTCGTCATCGACCCCCGCGCCGGCCACGGCCCCGG CATCGGCGGCTTCAAGATGGACAGCGAGATCGGCATCGCGCTGCAGCAAGGCCACCCCTGCTATTTCGTGATGTTCTTCC CGCAGCCGGTGCCTGGCCAGACCATAGAAAGCGTGGCCAAGGCCGAGGGGCATTTCCTCAAGCGCGTCAACGAGCTGCAT CCGGACAGCGACGGCAAGCCTTTCGTGATCGGCAACTGCCAGGGCGGCTGGGCGCTGGCCATGCTCGCGTCCGTCGCGCC GGAACTGGTCGGCCCCATCCTGCTGGCCGGATCGCCGCTGTCCTACTGGGCCGGCGTGCGCGGCAAGAATCCGATGCGCT ACGCCGGCGGACTGACCGGCGGCACCTGGACCGCCTCGCTGGCCGGCGACCTGGGCAACGGCCATTTCGACGGCGCCCAC CTAGTGGAGAATTTCGAAAAGCTGGACCCGGCCAACACGCTGTGGAAGAAGTCCTACAATCTGTACGCCAAGGTGGACAC CGAACCGCAGCGCTACCTGGATTTCGAGCGCTGGTGGGGCGGCCATTACCTGCTGAACAAGGCGGAAATGGAGTGGATCG CCCAGAAGCTGTTCGTCGGCAACGAGCTGGTGCACGGCAAGATCACCAGCCACGACGGCAAGGTGCGGGTAGACATGCGC AACATCCGCTCGCCCATCATGGTGTTCGCCTCCTGGGGCGACAACATCACGCCGCCGCAGCAGGCGCTGAACTGGATCGC CGACCTCTACGACAACGTCGAGGACATCCGCAACAACGAGCAGACCATCGTCTACTGCCTGCACAACAAGGTCGGCCACC TGGGCATCTTCGTGTCCGCCGGCGTGGCCAACAAGGAACACAGCGAATTCGCCAGCGCGCTGGACCTGGTCGACGTGCTG GCGCCCGGCCTGTACGAGGCCATCATCGAGGATATCGCGCCGGACGCGCCCGGCCAGGAATACATCGAGGGGCGCTACAT CATCCGCTTCGAGGCCCGCGACGTGTCCGACATCCTGGCGCTGGACGACGGCCGCGACGACGAGCGCGCGTTCGAGGTGG TGAAGCGGGTGTCGGAGATCAATCAGGGCGTCTACGACCGCTACGTCTCGCCGGCGCTGCGCGCCGCCGGCACCGAGGCT GGCGCCCGCCTGCTGCGGGAGTTGCACCCCGCCCGCTTCGAGCGCACGCTGATCTCGCCAAGAAATCCCTGGCTGTGGTG GCTGCCCGGCCTCGCCGCCAAGGTGCGCGAACAGCGTCGCCCCGTGTCCCAGGACAACCCGCTGTGGCAGTGGCAGGAAC AGGTGTCGGACTTCATCGTCCAGTCGCTGGACCATTACCGCGACCTGCGCGACGCCGCTCAGGAGCAACTGTTCCGCTCG ATCTACGAATCGCCGCAGCTGGCCACGCTGGTCGGCGTGGCCCCCGCCGGCGAGCCGCGCAGCCAGGCCCTGGCCTGGGA AACCCGCGAGCTCGCCCGCCTGAAGCGCGAGGCGCTGGATCCCAGCTTCGAACAGGGCACGCTGGCAGACGGCTTCGTGC GGCTGCTGCTCTACGTCAGCATCGGCATCGGCGTGGTGGACGAGCGGCCATTCAACGCCATTCGCCGAGTGATGCGCGAC GTGCGCCACGAATACCCGCTGACGCTGATGCAGTTGAAGGACATCGTCCGCCACCAGGTGGCGCTGGTGCGGCTGGACGC CCCGCGCGCGCTGCGCGGACTCGCCCGGCTGCTGCCCGACCCGCACCGCCGCCACCAGGCCTGGCTGCTGGCGCGCGACC TGCTGGTGCTGAACGGCCCGATCCCGGCCGAACACCAGGCGCGGCTGGACGAAGCGGCCAGGGTGTTGGCGCTGGATGCA GACGCGGCCGCCCGGTCGGTCCTCCCTGCGGCGCAGCCTGAGCCTAAAGCGCCTGCCGACAAGCCGACAGGCGCGGCCAA GACGCCGCGCAAAGCCGCCAAGCCTTCGGCCTCGAAATCGCCGGCGGCCGAAGCCAAACCAGTTGCCAAGACCGCCGCCT CGACCCGCGCGCGCCAGCCCGCGGCCAAGGCCAACGGCCAGGCGCCGGGCAGCGCGCCGGCCGTCGCGGCGCCTGGCAAA CGAGGCAAGACGTAA
Upstream 100 bases:
>100_bases TTTATTGCATCGCAGCAAATAACGAGTACAGTGACGGCCATGGCTCTCAACGGGCCGTCGCATCGCGTCTTTTCCTACCG TTCAAGAACAAGGGGTTGCA
Downstream 100 bases:
>100_bases GCCATGCGCGGGAGCCGGGGTGGCTCGGTTCCCGCATTGACTATTGCAATAGCGAAAGCTAATATTCCGGTTCTGCGGGA GAGAGGGGCCACGCCCCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MWSTAAVQGGKLPFPQPLFDYWLDACQRGVLYWDTLYRRGATYLEHCESGKPPVLVFDYRIIMDGRELPDPANYALAAIV PPAACPPTDPAKRPFVVIDPRAGHGPGIGGFKMDSEIGIALQQGHPCYFVMFFPQPVPGQTIESVAKAEGHFLKRVNELH PDSDGKPFVIGNCQGGWALAMLASVAPELVGPILLAGSPLSYWAGVRGKNPMRYAGGLTGGTWTASLAGDLGNGHFDGAH LVENFEKLDPANTLWKKSYNLYAKVDTEPQRYLDFERWWGGHYLLNKAEMEWIAQKLFVGNELVHGKITSHDGKVRVDMR NIRSPIMVFASWGDNITPPQQALNWIADLYDNVEDIRNNEQTIVYCLHNKVGHLGIFVSAGVANKEHSEFASALDLVDVL APGLYEAIIEDIAPDAPGQEYIEGRYIIRFEARDVSDILALDDGRDDERAFEVVKRVSEINQGVYDRYVSPALRAAGTEA GARLLRELHPARFERTLISPRNPWLWWLPGLAAKVREQRRPVSQDNPLWQWQEQVSDFIVQSLDHYRDLRDAAQEQLFRS IYESPQLATLVGVAPAGEPRSQALAWETRELARLKREALDPSFEQGTLADGFVRLLLYVSIGIGVVDERPFNAIRRVMRD VRHEYPLTLMQLKDIVRHQVALVRLDAPRALRGLARLLPDPHRRHQAWLLARDLLVLNGPIPAEHQARLDEAARVLALDA DAAARSVLPAAQPEPKAPADKPTGAAKTPRKAAKPSASKSPAAEAKPVAKTAASTRARQPAAKANGQAPGSAPAVAAPGK RGKT
Sequences:
>Translated_804_residues MWSTAAVQGGKLPFPQPLFDYWLDACQRGVLYWDTLYRRGATYLEHCESGKPPVLVFDYRIIMDGRELPDPANYALAAIV PPAACPPTDPAKRPFVVIDPRAGHGPGIGGFKMDSEIGIALQQGHPCYFVMFFPQPVPGQTIESVAKAEGHFLKRVNELH PDSDGKPFVIGNCQGGWALAMLASVAPELVGPILLAGSPLSYWAGVRGKNPMRYAGGLTGGTWTASLAGDLGNGHFDGAH LVENFEKLDPANTLWKKSYNLYAKVDTEPQRYLDFERWWGGHYLLNKAEMEWIAQKLFVGNELVHGKITSHDGKVRVDMR NIRSPIMVFASWGDNITPPQQALNWIADLYDNVEDIRNNEQTIVYCLHNKVGHLGIFVSAGVANKEHSEFASALDLVDVL APGLYEAIIEDIAPDAPGQEYIEGRYIIRFEARDVSDILALDDGRDDERAFEVVKRVSEINQGVYDRYVSPALRAAGTEA GARLLRELHPARFERTLISPRNPWLWWLPGLAAKVREQRRPVSQDNPLWQWQEQVSDFIVQSLDHYRDLRDAAQEQLFRS IYESPQLATLVGVAPAGEPRSQALAWETRELARLKREALDPSFEQGTLADGFVRLLLYVSIGIGVVDERPFNAIRRVMRD VRHEYPLTLMQLKDIVRHQVALVRLDAPRALRGLARLLPDPHRRHQAWLLARDLLVLNGPIPAEHQARLDEAARVLALDA DAAARSVLPAAQPEPKAPADKPTGAAKTPRKAAKPSASKSPAAEAKPVAKTAASTRARQPAAKANGQAPGSAPAVAAPGK RGKT >Mature_804_residues MWSTAAVQGGKLPFPQPLFDYWLDACQRGVLYWDTLYRRGATYLEHCESGKPPVLVFDYRIIMDGRELPDPANYALAAIV PPAACPPTDPAKRPFVVIDPRAGHGPGIGGFKMDSEIGIALQQGHPCYFVMFFPQPVPGQTIESVAKAEGHFLKRVNELH PDSDGKPFVIGNCQGGWALAMLASVAPELVGPILLAGSPLSYWAGVRGKNPMRYAGGLTGGTWTASLAGDLGNGHFDGAH LVENFEKLDPANTLWKKSYNLYAKVDTEPQRYLDFERWWGGHYLLNKAEMEWIAQKLFVGNELVHGKITSHDGKVRVDMR NIRSPIMVFASWGDNITPPQQALNWIADLYDNVEDIRNNEQTIVYCLHNKVGHLGIFVSAGVANKEHSEFASALDLVDVL APGLYEAIIEDIAPDAPGQEYIEGRYIIRFEARDVSDILALDDGRDDERAFEVVKRVSEINQGVYDRYVSPALRAAGTEA GARLLRELHPARFERTLISPRNPWLWWLPGLAAKVREQRRPVSQDNPLWQWQEQVSDFIVQSLDHYRDLRDAAQEQLFRS IYESPQLATLVGVAPAGEPRSQALAWETRELARLKREALDPSFEQGTLADGFVRLLLYVSIGIGVVDERPFNAIRRVMRD VRHEYPLTLMQLKDIVRHQVALVRLDAPRALRGLARLLPDPHRRHQAWLLARDLLVLNGPIPAEHQARLDEAARVLALDA DAAARSVLPAAQPEPKAPADKPTGAAKTPRKAAKPSASKSPAAEAKPVAKTAASTRARQPAAKANGQAPGSAPAVAAPGK RGKT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88817; Mature: 88817
Theoretical pI: Translated: 7.35; Mature: 7.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWSTAAVQGGKLPFPQPLFDYWLDACQRGVLYWDTLYRRGATYLEHCESGKPPVLVFDYR CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCCCEEEEEEE IIMDGRELPDPANYALAAIVPPAACPPTDPAKRPFVVIDPRAGHGPGIGGFKMDSEIGIA EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEE LQQGHPCYFVMFFPQPVPGQTIESVAKAEGHFLKRVNELHPDSDGKPFVIGNCQGGWALA EECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHH MLASVAPELVGPILLAGSPLSYWAGVRGKNPMRYAGGLTGGTWTASLAGDLGNGHFDGAH HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCCHHH LVENFEKLDPANTLWKKSYNLYAKVDTEPQRYLDFERWWGGHYLLNKAEMEWIAQKLFVG HHHHHHHCCCHHHHHHHCCCEEEEECCCHHHHHCHHHHCCCHHEECHHHHHHHHHHHHHC NELVHGKITSHDGKVRVDMRNIRSPIMVFASWGDNITPPQQALNWIADLYDNVEDIRNNE CCEEECEEECCCCEEEEEHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC QTIVYCLHNKVGHLGIFVSAGVANKEHSEFASALDLVDVLAPGLYEAIIEDIAPDAPGQE CEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHH YIEGRYIIRFEARDVSDILALDDGRDDERAFEVVKRVSEINQGVYDRYVSPALRAAGTEA HHCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH GARLLRELHPARFERTLISPRNPWLWWLPGLAAKVREQRRPVSQDNPLWQWQEQVSDFIV HHHHHHHHCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH QSLDHYRDLRDAAQEQLFRSIYESPQLATLVGVAPAGEPRSQALAWETRELARLKREALD HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC PSFEQGTLADGFVRLLLYVSIGIGVVDERPFNAIRRVMRDVRHEYPLTLMQLKDIVRHQV CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ALVRLDAPRALRGLARLLPDPHRRHQAWLLARDLLVLNGPIPAEHQARLDEAARVLALDA HEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEEEECC DAAARSVLPAAQPEPKAPADKPTGAAKTPRKAAKPSASKSPAAEAKPVAKTAASTRARQP CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC AAKANGQAPGSAPAVAAPGKRGKT HHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MWSTAAVQGGKLPFPQPLFDYWLDACQRGVLYWDTLYRRGATYLEHCESGKPPVLVFDYR CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHCCCCCCEEEEEEE IIMDGRELPDPANYALAAIVPPAACPPTDPAKRPFVVIDPRAGHGPGIGGFKMDSEIGIA EEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEE LQQGHPCYFVMFFPQPVPGQTIESVAKAEGHFLKRVNELHPDSDGKPFVIGNCQGGWALA EECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHH MLASVAPELVGPILLAGSPLSYWAGVRGKNPMRYAGGLTGGTWTASLAGDLGNGHFDGAH HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCCHHH LVENFEKLDPANTLWKKSYNLYAKVDTEPQRYLDFERWWGGHYLLNKAEMEWIAQKLFVG HHHHHHHCCCHHHHHHHCCCEEEEECCCHHHHHCHHHHCCCHHEECHHHHHHHHHHHHHC NELVHGKITSHDGKVRVDMRNIRSPIMVFASWGDNITPPQQALNWIADLYDNVEDIRNNE CCEEECEEECCCCEEEEEHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC QTIVYCLHNKVGHLGIFVSAGVANKEHSEFASALDLVDVLAPGLYEAIIEDIAPDAPGQE CEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHH YIEGRYIIRFEARDVSDILALDDGRDDERAFEVVKRVSEINQGVYDRYVSPALRAAGTEA HHCCEEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH GARLLRELHPARFERTLISPRNPWLWWLPGLAAKVREQRRPVSQDNPLWQWQEQVSDFIV HHHHHHHHCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH QSLDHYRDLRDAAQEQLFRSIYESPQLATLVGVAPAGEPRSQALAWETRELARLKREALD HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC PSFEQGTLADGFVRLLLYVSIGIGVVDERPFNAIRRVMRDVRHEYPLTLMQLKDIVRHQV CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH ALVRLDAPRALRGLARLLPDPHRRHQAWLLARDLLVLNGPIPAEHQARLDEAARVLALDA HEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEEEECC DAAARSVLPAAQPEPKAPADKPTGAAKTPRKAAKPSASKSPAAEAKPVAKTAASTRARQP CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC AAKANGQAPGSAPAVAAPGKRGKT HHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10094701 [H]