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The map label for this gene is porB [H]

Identifier: 34497444

GI number: 34497444

Start: 2167425

End: 2168576

Strand: Reverse

Name: porB [H]

Synonym: CV_1989

Alternate gene names: 34497444

Gene position: 2168576-2167425 (Counterclockwise)

Preceding gene: 34497445

Following gene: 34497432

Centisome position: 45.64

GC content: 57.64

Gene sequence:

>1152_bases
ATGCAAAAGAAGAATCTGGCAGTAATCGTTGCATCGCTTTTCATCGTACCGGTCGCAGCTCACGCCGATGTGACCATCTA
TGGTTTCCTGAGCGGCGGCATCGAATCCGCCAAGGCCACCGGCAATGGCAACAGTGCCAAGGACTACGCATCCCGCACTC
GCGTGGTAGACGAAAACTCCCGCATCGGCTTCAAGGGCTGGGAAGACTTGGGCGGCGGCACCAAGGCCATCTGGCAAGTA
GAAAGCAGCCTGCGCAACTTTGAGAACGGCGGCACCAACGACAAGGGCCAGACCGCATCCTTCGGCACCCGCAACACCTT
CATCGGCATCGACAACGGCGACTTCGGCAAGGTGCTGCTGGGTCAGAACGACTCTGCCTACAAGATGTTCACCGGCAGCG
GCAATAGCGCGCTGGGCACCGATGTGATGATCAATACCACCGCCGACAACTTCGGCGCCAGCTCGGTCAACAGCCGCGGC
GAAGCCCGTCTGGCCAATTCTATCCACTGGTTCTCCCCGAATTGGGCTGGCTTCAAGCTGGGCGCATCCTGGGGCGTGGA
TGAAGCACGCACCAACGGCACCGACGCTAAACGCATCTCCTTGGGCCTGGGCTACACTTGGGGCGCCCTGAATCTGGCTA
CCGCTTGGGACAAGCAATACGATAAGGGCGTTGCTGCCAACACCACGACCGCCTCTGTCAATTCCGGCTCCAACATCTCG
TTCTACAGCATCGCCGCCAGCTATAAATTCGACTCCGGCACCTTCATTGGCGGCAACTACGAATGGGGCAATTTCGACCA
AGTCGGCGGCGGCCAGGTGAAGCAGGATGACTGGCAGATCGCTCTCGGTCAGGATTTTGGCGCAGCCTCAATCAAACTGG
CATACGGTCAGCTCGGCGCACTGAAGAATGTCGGTGCGGGCGTAAACGGCAACGATTTCAAGGCCAAGCAATGGATTCTG
GGCGGCACCTACAACCTATCCAAATCCACTCAACTGCTGGCCTATGCCACCAAGATCACCAACAATGCCAAGGCAAGTGC
AAACTTCGCCAACAACCCGGTCTACGATACCAACCTGGGAAACAAAGATGCGAGTTTGACTGCCGGCAACAGCCCGCAAG
CTTTTGGCATCGGCATGAAGGTTTCCTTCTAA

Upstream 100 bases:

>100_bases
TAAGACAAAGTCGTGAAGTAGCCGTGCAAGCGTTGCCAAAACCGGACACGGTCTCTTCACTGCTTCACAACAGAACCACA
GACTTGACTTGGAGTTCACC

Downstream 100 bases:

>100_bases
GCCTTACCACAAGCGTTCCAAATCAAACGCCACGGCATGCCGTGGCGTTTTTTATCGCCCATGCCTGAGCAAGCTCATCA
GCCGCACACGCGGCTCAGCT

Product: porin protein

Products: NA

Alternate protein names: PIB; Protein IB; Class 3 protein; Porin [H]

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MQKKNLAVIVASLFIVPVAAHADVTIYGFLSGGIESAKATGNGNSAKDYASRTRVVDENSRIGFKGWEDLGGGTKAIWQV
ESSLRNFENGGTNDKGQTASFGTRNTFIGIDNGDFGKVLLGQNDSAYKMFTGSGNSALGTDVMINTTADNFGASSVNSRG
EARLANSIHWFSPNWAGFKLGASWGVDEARTNGTDAKRISLGLGYTWGALNLATAWDKQYDKGVAANTTTASVNSGSNIS
FYSIAASYKFDSGTFIGGNYEWGNFDQVGGGQVKQDDWQIALGQDFGAASIKLAYGQLGALKNVGAGVNGNDFKAKQWIL
GGTYNLSKSTQLLAYATKITNNAKASANFANNPVYDTNLGNKDASLTAGNSPQAFGIGMKVSF

Sequences:

>Translated_383_residues
MQKKNLAVIVASLFIVPVAAHADVTIYGFLSGGIESAKATGNGNSAKDYASRTRVVDENSRIGFKGWEDLGGGTKAIWQV
ESSLRNFENGGTNDKGQTASFGTRNTFIGIDNGDFGKVLLGQNDSAYKMFTGSGNSALGTDVMINTTADNFGASSVNSRG
EARLANSIHWFSPNWAGFKLGASWGVDEARTNGTDAKRISLGLGYTWGALNLATAWDKQYDKGVAANTTTASVNSGSNIS
FYSIAASYKFDSGTFIGGNYEWGNFDQVGGGQVKQDDWQIALGQDFGAASIKLAYGQLGALKNVGAGVNGNDFKAKQWIL
GGTYNLSKSTQLLAYATKITNNAKASANFANNPVYDTNLGNKDASLTAGNSPQAFGIGMKVSF
>Mature_383_residues
MQKKNLAVIVASLFIVPVAAHADVTIYGFLSGGIESAKATGNGNSAKDYASRTRVVDENSRIGFKGWEDLGGGTKAIWQV
ESSLRNFENGGTNDKGQTASFGTRNTFIGIDNGDFGKVLLGQNDSAYKMFTGSGNSALGTDVMINTTADNFGASSVNSRG
EARLANSIHWFSPNWAGFKLGASWGVDEARTNGTDAKRISLGLGYTWGALNLATAWDKQYDKGVAANTTTASVNSGSNIS
FYSIAASYKFDSGTFIGGNYEWGNFDQVGGGQVKQDDWQIALGQDFGAASIKLAYGQLGALKNVGAGVNGNDFKAKQWIL
GGTYNLSKSTQLLAYATKITNNAKASANFANNPVYDTNLGNKDASLTAGNSPQAFGIGMKVSF

Specific function: Serves as a slightly cation selective porin [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013793
- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40320; Mature: 40320

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKKNLAVIVASLFIVPVAAHADVTIYGFLSGGIESAKATGNGNSAKDYASRTRVVDENS
CCCCHHHHEEEHHHHHEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCEEECCCC
RIGFKGWEDLGGGTKAIWQVESSLRNFENGGTNDKGQTASFGTRNTFIGIDNGDFGKVLL
CCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
GQNDSAYKMFTGSGNSALGTDVMINTTADNFGASSVNSRGEARLANSIHWFSPNWAGFKL
CCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCEEEECCCCCCEEE
GASWGVDEARTNGTDAKRISLGLGYTWGALNLATAWDKQYDKGVAANTTTASVNSGSNIS
CCCCCCCHHHCCCCCCEEEEEECCCCCCCEEEEHHHHHHHCCCCCCCCEEEECCCCCCEE
FYSIAASYKFDSGTFIGGNYEWGNFDQVGGGQVKQDDWQIALGQDFGAASIKLAYGQLGA
EEEEEEEEEECCCCEECCCCCCCCCCCCCCCCEECCCEEEEECCCCCCEEEEEECHHHCC
LKNVGAGVNGNDFKAKQWILGGTYNLSKSTQLLAYATKITNNAKASANFANNPVYDTNLG
HHHCCCCCCCCCCEEEEEEECCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCC
NKDASLTAGNSPQAFGIGMKVSF
CCCCEEECCCCCCEEEEEEEEEC
>Mature Secondary Structure
MQKKNLAVIVASLFIVPVAAHADVTIYGFLSGGIESAKATGNGNSAKDYASRTRVVDENS
CCCCHHHHEEEHHHHHEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHCEEECCCC
RIGFKGWEDLGGGTKAIWQVESSLRNFENGGTNDKGQTASFGTRNTFIGIDNGDFGKVLL
CCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE
GQNDSAYKMFTGSGNSALGTDVMINTTADNFGASSVNSRGEARLANSIHWFSPNWAGFKL
CCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCEEEECCCCCCEEE
GASWGVDEARTNGTDAKRISLGLGYTWGALNLATAWDKQYDKGVAANTTTASVNSGSNIS
CCCCCCCHHHCCCCCCEEEEEECCCCCCCEEEEHHHHHHHCCCCCCCCEEEECCCCCCEE
FYSIAASYKFDSGTFIGGNYEWGNFDQVGGGQVKQDDWQIALGQDFGAASIKLAYGQLGA
EEEEEEEEEECCCCEECCCCCCCCCCCCCCCCEECCCEEEEECCCCCCEEEEEECHHHCC
LKNVGAGVNGNDFKAKQWILGGTYNLSKSTQLLAYATKITNNAKASANFANNPVYDTNLG
HHHCCCCCCCCCCEEEEEEECCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCEEECCCC
NKDASLTAGNSPQAFGIGMKVSF
CCCCEEECCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1330818; 10710307 [H]