| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is gltX
Identifier: 34497392
GI number: 34497392
Start: 2107938
End: 2109323
Strand: Direct
Name: gltX
Synonym: CV_1937
Alternate gene names: 34497392
Gene position: 2107938-2109323 (Clockwise)
Preceding gene: 34497391
Following gene: 34497396
Centisome position: 44.37
GC content: 66.31
Gene sequence:
>1386_bases ATGATCCGTACCCGTTTCGCCCCCAGCCCCACCGGTTACCTGCACATCGGCGGCGTGCGCACCGCGCTGTTCTCCTGGGC CTACGCCCGCAAAAACAACGGCGTGTTCGTGCTGCGCATCGAAGACACCGATCTGGAGCGCTCCACGCCGGAATCGGTGA AGGCGATCCTGGACGGCATGCACTGGGTGGGTCTGGACTACGACGAGGGCCCGTTCTACCAGACCCATCGTTTCGACCGC TACAAGGAAGTGATCCAGCAGCTGCTGGACAGCGGCCACGCCTACCACTGCTACTGCAGCAAGGAAGAGCTGGAGGCGAT GCGCGCCGAGCAGGAAGCCCGCGGCGACAAGCCGCGCTATGACCGCCGCTGGCGTCCGGAAGCCGGCAAGACCCTGCCGG CCATCCCGGAAGGCGTGCAGCCGGTGGTGCGCTTCAAGACCCCGCTCTCCGGCGTGGTGGCTTGGGACGACGCGGTCAAG GGCCGCATCGAGATTTCCAACGAAGAGCTGGACGATCTGATCATCGCCCGCCCGGACGGCAGCCCCACCTACAACTTCTG CGTGGTGGTGGACGACTGGGACATGCGGATCACCCACGTGATCCGCGGCGACGACCATGTCAACAACACCCCGCGCCAGA TCAACATCCTCAAGGCGCTGAACGCGCCGCTGCCGGTGTACGGCCACCTGCCGATGATCCTGAACGAGGACGGCCAGAAG ATGTCCAAGCGCCGCGACGCGGTCAGCGTGGTGGATTACGCCGACAAGGGCATCCTGCCGGAAGCGCTGCTGAACTACCT GGCGCGCCTGGGCTGGGGCCACGGCGACGACGAATTCTTCAGCATGGAGCAGTTCGTCGAGTGGTTCAGCCTGGAGGCGG TGAGCCCGTCGGCCAGCCGCTTCAACCACGAAAAATTCATGTGGCTGAACGCCCAGCACATCAAGGCCGCCGACAACGCC CGCCTGGCCGAGCTGATCGCGCCGCGCCTGGCCGCCGCCCATGTCGACACCGCCCATGGCCCGGCCATCGGCGACGTGCT GGCACTGGTCAAGGAGCGCGTGCAGGATCTGAACGCGCTGGCGCTGGAAGTGGATTACTTCTACAAGAAGCGCGAACCGG CCGCCGCCGATGTGGAAAAGCATCTGGCCGGCGACGCCGTCGAGCGCATGGGCCGCTTCGCCGACCGTCTGGCCGCGCTG GAAGCCTGGACCGCCGAATCGATCCACGAGCTGTTCAAGCCGTTCTGCGCCGACGAGGGCATCAAGATGGGCCAGCTGGG CATGCCGCTGCGCGTGCTGGTGTGCGGCACCACCCAGACGCCGTCGGTTGACGCGGTGCTGGCGCTGATCGGCAAGGAAG AAGTGCTGCGCCGCATCCGCGGCTGA
Upstream 100 bases:
>100_bases TGATGGTTTGAGCCCCGATTTTCCCGAGCCCGCGTTTGCGGGCTTTTTTGTTGGCGGCGTACAATGACGCCTTTGTGTTT TTCTCAGAGTCCAACCCATC
Downstream 100 bases:
>100_bases TTCTGTCCGGCTGGCATCATCGCCCCCGCCGCCCTGATGGGCCGCGGGGGTTTTGTTTGCCCTCAGCCGGAGGCCAGCCG CGCCAAGTAGCGCAGGCCGC
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MIRTRFAPSPTGYLHIGGVRTALFSWAYARKNNGVFVLRIEDTDLERSTPESVKAILDGMHWVGLDYDEGPFYQTHRFDR YKEVIQQLLDSGHAYHCYCSKEELEAMRAEQEARGDKPRYDRRWRPEAGKTLPAIPEGVQPVVRFKTPLSGVVAWDDAVK GRIEISNEELDDLIIARPDGSPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALNAPLPVYGHLPMILNEDGQK MSKRRDAVSVVDYADKGILPEALLNYLARLGWGHGDDEFFSMEQFVEWFSLEAVSPSASRFNHEKFMWLNAQHIKAADNA RLAELIAPRLAAAHVDTAHGPAIGDVLALVKERVQDLNALALEVDYFYKKREPAAADVEKHLAGDAVERMGRFADRLAAL EAWTAESIHELFKPFCADEGIKMGQLGMPLRVLVCGTTQTPSVDAVLALIGKEEVLRRIRG
Sequences:
>Translated_461_residues MIRTRFAPSPTGYLHIGGVRTALFSWAYARKNNGVFVLRIEDTDLERSTPESVKAILDGMHWVGLDYDEGPFYQTHRFDR YKEVIQQLLDSGHAYHCYCSKEELEAMRAEQEARGDKPRYDRRWRPEAGKTLPAIPEGVQPVVRFKTPLSGVVAWDDAVK GRIEISNEELDDLIIARPDGSPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALNAPLPVYGHLPMILNEDGQK MSKRRDAVSVVDYADKGILPEALLNYLARLGWGHGDDEFFSMEQFVEWFSLEAVSPSASRFNHEKFMWLNAQHIKAADNA RLAELIAPRLAAAHVDTAHGPAIGDVLALVKERVQDLNALALEVDYFYKKREPAAADVEKHLAGDAVERMGRFADRLAAL EAWTAESIHELFKPFCADEGIKMGQLGMPLRVLVCGTTQTPSVDAVLALIGKEEVLRRIRG >Mature_461_residues MIRTRFAPSPTGYLHIGGVRTALFSWAYARKNNGVFVLRIEDTDLERSTPESVKAILDGMHWVGLDYDEGPFYQTHRFDR YKEVIQQLLDSGHAYHCYCSKEELEAMRAEQEARGDKPRYDRRWRPEAGKTLPAIPEGVQPVVRFKTPLSGVVAWDDAVK GRIEISNEELDDLIIARPDGSPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALNAPLPVYGHLPMILNEDGQK MSKRRDAVSVVDYADKGILPEALLNYLARLGWGHGDDEFFSMEQFVEWFSLEAVSPSASRFNHEKFMWLNAQHIKAADNA RLAELIAPRLAAAHVDTAHGPAIGDVLALVKERVQDLNALALEVDYFYKKREPAAADVEKHLAGDAVERMGRFADRLAAL EAWTAESIHELFKPFCADEGIKMGQLGMPLRVLVCGTTQTPSVDAVLALIGKEEVLRRIRG
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=495, Percent_Identity=31.5151515151515, Blast_Score=225, Evalue=8e-59, Organism=Homo sapiens, GI4826960, Length=294, Percent_Identity=27.5510204081633, Blast_Score=76, Evalue=6e-14, Organism=Escherichia coli, GI1788743, Length=459, Percent_Identity=54.9019607843137, Blast_Score=515, Evalue=1e-147, Organism=Escherichia coli, GI226510925, Length=285, Percent_Identity=32.9824561403509, Blast_Score=137, Evalue=1e-33, Organism=Caenorhabditis elegans, GI71993394, Length=477, Percent_Identity=30.188679245283, Blast_Score=220, Evalue=1e-57, Organism=Caenorhabditis elegans, GI17543332, Length=120, Percent_Identity=30.8333333333333, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324540, Length=483, Percent_Identity=30.2277432712215, Blast_Score=227, Evalue=2e-60, Organism=Saccharomyces cerevisiae, GI6324742, Length=114, Percent_Identity=35.0877192982456, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6321192, Length=235, Percent_Identity=26.8085106382979, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI24665321, Length=495, Percent_Identity=30.7070707070707, Blast_Score=228, Evalue=5e-60,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_CHRVO (Q7NWP4)
Other databases:
- EMBL: AE016825 - RefSeq: NP_901607.1 - ProteinModelPortal: Q7NWP4 - SMR: Q7NWP4 - GeneID: 2550471 - GenomeReviews: AE016825_GR - KEGG: cvi:CV_1937 - NMPDR: fig|243365.1.peg.1937 - HOGENOM: HBG628189 - OMA: MAHIPLI - PhylomeDB: Q7NWP4 - ProtClustDB: PRK01406 - BioCyc: CVIO243365:CV_1937-MONOMER - BRENDA: 6.1.1.17 - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 51914; Mature: 51914
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 243-243
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRTRFAPSPTGYLHIGGVRTALFSWAYARKNNGVFVLRIEDTDLERSTPESVKAILDGM CCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHCCC HWVGLDYDEGPFYQTHRFDRYKEVIQQLLDSGHAYHCYCSKEELEAMRAEQEARGDKPRY CEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCCC DRRWRPEAGKTLPAIPEGVQPVVRFKTPLSGVVAWDDAVKGRIEISNEELDDLIIARPDG CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCEEEECCCC SPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALNAPLPVYGHLPMILNEDGQK CCCEEEEEEEECCCCEEEEEEECCCCCCCCCHHEEHHHHHCCCCCCCCCCCCEECCCHHH MSKRRDAVSVVDYADKGILPEALLNYLARLGWGHGDDEFFSMEQFVEWFSLEAVSPSASR HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH FNHEKFMWLNAQHIKAADNARLAELIAPRLAAAHVDTAHGPAIGDVLALVKERVQDLNAL CCCCEEEEECHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ALEVDYFYKKREPAAADVEKHLAGDAVERMGRFADRLAALEAWTAESIHELFKPFCADEG EEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IKMGQLGMPLRVLVCGTTQTPSVDAVLALIGKEEVLRRIRG CCCCCCCCCEEEEEECCCCCCCHHHHHHHHCHHHHHHHHCC >Mature Secondary Structure MIRTRFAPSPTGYLHIGGVRTALFSWAYARKNNGVFVLRIEDTDLERSTPESVKAILDGM CCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHCCC HWVGLDYDEGPFYQTHRFDRYKEVIQQLLDSGHAYHCYCSKEELEAMRAEQEARGDKPRY CEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCCC DRRWRPEAGKTLPAIPEGVQPVVRFKTPLSGVVAWDDAVKGRIEISNEELDDLIIARPDG CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCEEEECCCCCCCEEEECCCC SPTYNFCVVVDDWDMRITHVIRGDDHVNNTPRQINILKALNAPLPVYGHLPMILNEDGQK CCCEEEEEEEECCCCEEEEEEECCCCCCCCCHHEEHHHHHCCCCCCCCCCCCEECCCHHH MSKRRDAVSVVDYADKGILPEALLNYLARLGWGHGDDEFFSMEQFVEWFSLEAVSPSASR HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH FNHEKFMWLNAQHIKAADNARLAELIAPRLAAAHVDTAHGPAIGDVLALVKERVQDLNAL CCCCEEEEECHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ALEVDYFYKKREPAAADVEKHLAGDAVERMGRFADRLAALEAWTAESIHELFKPFCADEG EEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IKMGQLGMPLRVLVCGTTQTPSVDAVLALIGKEEVLRRIRG CCCCCCCCCEEEEEECCCCCCCHHHHHHHHCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 14500782