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The map label for this gene is dcrA [H]

Identifier: 34497367

GI number: 34497367

Start: 2077402

End: 2078529

Strand: Reverse

Name: dcrA [H]

Synonym: CV_1912

Alternate gene names: 34497367

Gene position: 2078529-2077402 (Counterclockwise)

Preceding gene: 34497368

Following gene: 34497366

Centisome position: 43.75

GC content: 63.48

Gene sequence:

>1128_bases
ATGTTTGGTTTCAAGAAAGCGGCAAGCAAGGCCGAGGACGCGGCGCGCATGGTGCGCCAGCTGGAAAGCGTGCTGGACCA
CGCCGACAATCTGATCATGTTGTGCGATACCACCCGCGACAACACGATCTTCTACATGAACCAGACCGCGCGCGACGTGC
TGGGCCGCCACCGCGAGATGATGAACCAGAAATTCCGCGCCGGCGTCGACGTCAACCGCGCTCACGGCCACAGCATCCAT
CAATTCCACCGCGATCCGGAACACAACCGCCGCATCCTGGCGGACCTGGCCAGCGGCAAGATTCCCCAGCACACCGCGAT
GATCCCGGTGGGCGAGGTCATGTTCGAAACCAAGGTGTTCCCGATCTGGGATTCCGCCAACCCCAGCCAGTTGCTGTGCT
TCATGGCCAGCTTCCAGGATGTGTCATCCGAAATCCGCGCCCAGAAATTGCAGGAACAGGGCAATCAGCGCCGCGACTTC
CTGGAGGCCCGCGTCAACGAGCTGTCGGAAAACATGCAGGCGATGAGCGCCACGATACAGAACGTGGCGGTGCAGACCGC
GTCGGCGTCAGAATCGGCGGAACTGATGCTGGGCGAAGGCCGCAAGGGCGCCGGCATCGTCAGCGAAACCAGCAGCGGCA
TGAAGAACGTGGGCGGCATGGTGCGCGACACCGCCGACAGCCTGGAGTCGCTGGGACAGCGCTCCGAGACCATAGGCCAG
ATCGTCAACGTCATCAAGGACATTGCCGACCAGACCAACCTGCTGGCGCTGAACGCCGCCATCGAGGCCGCCCGCGCCGG
CGAGATGGGCCGCGGCTTCGCCGTGGTGGCGGACGAGGTGCGCAAGCTGGCCGAACGCACCACCAAGGCCACCCAGGAAA
TCGGCGACATGATCCGCGACATCCAGAACGAGGTGAAGCAGAACGTGGACGCGATCGAGCGCGGCCGCCAGCAGGTGGAC
GCCACTGAAAACGACTTCCAGCGCGCCGAGCAGGCGCTGGGCATCATCGTCGGCGAAATCAACAATATGCGCGACTTCGT
AGTGCAGATCGCCAACGCCGCCGAAGAGCAGGCCGCCACTTCGCAGGACATCGCCGACAAACTTGCCGAGATCGTGCGGC
AGTCCTGA

Upstream 100 bases:

>100_bases
GAAGACTTGACCAAAGCCTAGAAAAAGCTTGCTTTTATGTCCTGAGTCAACCAAACCCAAAATAACTACACCAGTAGAAA
CACTTAGCCGGGAGACAGGG

Downstream 100 bases:

>100_bases
AAGACTGTCCAAAGTTGCGTCCCTGGCCCACCGCCCCATCGAACGCCCCGGCAGCGGACGACGCTGCGACGGGGCGTTTT
CCGCGCCGGCGCACCGCTGG

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MFGFKKAASKAEDAARMVRQLESVLDHADNLIMLCDTTRDNTIFYMNQTARDVLGRHREMMNQKFRAGVDVNRAHGHSIH
QFHRDPEHNRRILADLASGKIPQHTAMIPVGEVMFETKVFPIWDSANPSQLLCFMASFQDVSSEIRAQKLQEQGNQRRDF
LEARVNELSENMQAMSATIQNVAVQTASASESAELMLGEGRKGAGIVSETSSGMKNVGGMVRDTADSLESLGQRSETIGQ
IVNVIKDIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRKLAERTTKATQEIGDMIRDIQNEVKQNVDAIERGRQQVD
ATENDFQRAEQALGIIVGEINNMRDFVVQIANAAEEQAATSQDIADKLAEIVRQS

Sequences:

>Translated_375_residues
MFGFKKAASKAEDAARMVRQLESVLDHADNLIMLCDTTRDNTIFYMNQTARDVLGRHREMMNQKFRAGVDVNRAHGHSIH
QFHRDPEHNRRILADLASGKIPQHTAMIPVGEVMFETKVFPIWDSANPSQLLCFMASFQDVSSEIRAQKLQEQGNQRRDF
LEARVNELSENMQAMSATIQNVAVQTASASESAELMLGEGRKGAGIVSETSSGMKNVGGMVRDTADSLESLGQRSETIGQ
IVNVIKDIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRKLAERTTKATQEIGDMIRDIQNEVKQNVDAIERGRQQVD
ATENDFQRAEQALGIIVGEINNMRDFVVQIANAAEEQAATSQDIADKLAEIVRQS
>Mature_375_residues
MFGFKKAASKAEDAARMVRQLESVLDHADNLIMLCDTTRDNTIFYMNQTARDVLGRHREMMNQKFRAGVDVNRAHGHSIH
QFHRDPEHNRRILADLASGKIPQHTAMIPVGEVMFETKVFPIWDSANPSQLLCFMASFQDVSSEIRAQKLQEQGNQRRDF
LEARVNELSENMQAMSATIQNVAVQTASASESAELMLGEGRKGAGIVSETSSGMKNVGGMVRDTADSLESLGQRSETIGQ
IVNVIKDIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRKLAERTTKATQEIGDMIRDIQNEVKQNVDAIERGRQQVD
ATENDFQRAEQALGIIVGEINNMRDFVVQIANAAEEQAATSQDIADKLAEIVRQS

Specific function: Signal Transducer For Aerotaxis. The Aerotactic Response Is The Accumulation Of Cells Around Air Bubbles. The Nature Of The Sensory Stimulus Detected By This Protein Is The Proton Motive Force Or Cellular Redox State. It Uses A FAD Prosthetic Group As A R

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=231, Percent_Identity=35.0649350649351, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788194, Length=196, Percent_Identity=35.2040816326531, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI2367378, Length=212, Percent_Identity=33.0188679245283, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788195, Length=161, Percent_Identity=38.5093167701863, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787690, Length=163, Percent_Identity=36.1963190184049, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 41414; Mature: 41414

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGFKKAASKAEDAARMVRQLESVLDHADNLIMLCDTTRDNTIFYMNQTARDVLGRHREM
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHH
MNQKFRAGVDVNRAHGHSIHQFHRDPEHNRRILADLASGKIPQHTAMIPVGEVMFETKVF
HHHHHHCCCCCCHHCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEE
PIWDSANPSQLLCFMASFQDVSSEIRAQKLQEQGNQRRDFLEARVNELSENMQAMSATIQ
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
NVAVQTASASESAELMLGEGRKGAGIVSETSSGMKNVGGMVRDTADSLESLGQRSETIGQ
HHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
IVNVIKDIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRKLAERTTKATQEIGDMIRD
HHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQNEVKQNVDAIERGRQQVDATENDFQRAEQALGIIVGEINNMRDFVVQIANAAEEQAAT
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQDIADKLAEIVRQS
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MFGFKKAASKAEDAARMVRQLESVLDHADNLIMLCDTTRDNTIFYMNQTARDVLGRHREM
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHH
MNQKFRAGVDVNRAHGHSIHQFHRDPEHNRRILADLASGKIPQHTAMIPVGEVMFETKVF
HHHHHHCCCCCCHHCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEE
PIWDSANPSQLLCFMASFQDVSSEIRAQKLQEQGNQRRDFLEARVNELSENMQAMSATIQ
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
NVAVQTASASESAELMLGEGRKGAGIVSETSSGMKNVGGMVRDTADSLESLGQRSETIGQ
HHHHHHCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
IVNVIKDIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRKLAERTTKATQEIGDMIRD
HHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IQNEVKQNVDAIERGRQQVDATENDFQRAEQALGIIVGEINNMRDFVVQIANAAEEQAAT
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQDIADKLAEIVRQS
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1548224 [H]