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The map label for this gene is yiaD [H]

Identifier: 34497346

GI number: 34497346

Start: 2056998

End: 2057669

Strand: Direct

Name: yiaD [H]

Synonym: CV_1891

Alternate gene names: 34497346

Gene position: 2056998-2057669 (Clockwise)

Preceding gene: 34497343

Following gene: 34497348

Centisome position: 43.3

GC content: 68.75

Gene sequence:

>672_bases
ATGATGAAGAACGCGATGGTATCGATGCTGGTTGCCGTGAGCGTGGCCGGCCTCTCCGGCTGCGCCAACATGAGCGACAC
GCAGAAGGGTGTGGGCGGCGGCGCGGCGATCGGAGCCGGCGTGGGCGCGGCGATCGGCGCGCTGACCGCGGGCGGCCACG
GCGGACGCAGCGCGGCCACCGGCGCGGCGATCGGCGGCCTGTTGGGCGCCGGCGGCGGCTATCTGTGGTCGCAACACATG
CAGAAGCAGAAGGAGGCGATGGAGCAGGCGACCAAGGGCACCGGCATCGGCGTCAGCCAGACCGCCGACAACCGCTTGAA
GATCAATATTCCCAGCGACGCCTCGTTCGACACCAACAGCTACGCGCTGAAGCCCAGCCTGAAGCCGGTGCTGGACAAGC
TGGCCACCACGCTGCAGCAGAACCCGGTGACTTCGGTCAACATCATCGGCCACACCGACAACACCGGCAGCGACGCGATC
AACAACCCGCTGTCAGTCAACCGCGCCAAGGCGACGCAGGGCTACCTGGCGTCGCGCGGCGTGGACATCAACCGCATCGG
CATCGACGGACGCGGCTCGCGCGAGCCGGTGGCCGACAACGGCACCGTGTCCGGCCGCGCGATGAACCGCCGCGTCGAGA
TCTACGTGGCGGAGCCGGCGCAGGCCAAGTAA

Upstream 100 bases:

>100_bases
GCTGAAGCGTTTCCGCTTGGGACGTTGCGATGGGCCGTCGCCGGGGAACTGTCCCGGCCTGCGGCGGTCTGTTCTGGATT
TGTTCGGAAAGGATGCTGAC

Downstream 100 bases:

>100_bases
GCCGGCATCCGGGGCGATCAAAAAGGGCGGCACCCCTTGGGGTGGCCGCCCTTGTCGCATTCATGCCGGCGACGGGATCA
GAACGTGGCTTCGATCAGCC

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MMKNAMVSMLVAVSVAGLSGCANMSDTQKGVGGGAAIGAGVGAAIGALTAGGHGGRSAATGAAIGGLLGAGGGYLWSQHM
QKQKEAMEQATKGTGIGVSQTADNRLKINIPSDASFDTNSYALKPSLKPVLDKLATTLQQNPVTSVNIIGHTDNTGSDAI
NNPLSVNRAKATQGYLASRGVDINRIGIDGRGSREPVADNGTVSGRAMNRRVEIYVAEPAQAK

Sequences:

>Translated_223_residues
MMKNAMVSMLVAVSVAGLSGCANMSDTQKGVGGGAAIGAGVGAAIGALTAGGHGGRSAATGAAIGGLLGAGGGYLWSQHM
QKQKEAMEQATKGTGIGVSQTADNRLKINIPSDASFDTNSYALKPSLKPVLDKLATTLQQNPVTSVNIIGHTDNTGSDAI
NNPLSVNRAKATQGYLASRGVDINRIGIDGRGSREPVADNGTVSGRAMNRRVEIYVAEPAQAK
>Mature_223_residues
MMKNAMVSMLVAVSVAGLSGCANMSDTQKGVGGGAAIGAGVGAAIGALTAGGHGGRSAATGAAIGGLLGAGGGYLWSQHM
QKQKEAMEQATKGTGIGVSQTADNRLKINIPSDASFDTNSYALKPSLKPVLDKLATTLQQNPVTSVNIIGHTDNTGSDAI
NNPLSVNRAKATQGYLASRGVDINRIGIDGRGSREPVADNGTVSGRAMNRRVEIYVAEPAQAK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=212, Percent_Identity=37.2641509433962, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787191, Length=120, Percent_Identity=35.8333333333333, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788957, Length=105, Percent_Identity=34.2857142857143, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22519; Mature: 22519

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKNAMVSMLVAVSVAGLSGCANMSDTQKGVGGGAAIGAGVGAAIGALTAGGHGGRSAAT
CCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
GAAIGGLLGAGGGYLWSQHMQKQKEAMEQATKGTGIGVSQTADNRLKINIPSDASFDTNS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCC
YALKPSLKPVLDKLATTLQQNPVTSVNIIGHTDNTGSDAINNPLSVNRAKATQGYLASRG
EEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHCCCCCCCCHHHHHHCHHHHCC
VDINRIGIDGRGSREPVADNGTVSGRAMNRRVEIYVAEPAQAK
CCEEEECCCCCCCCCCCCCCCCCCCEEECEEEEEEEECCCCCC
>Mature Secondary Structure
MMKNAMVSMLVAVSVAGLSGCANMSDTQKGVGGGAAIGAGVGAAIGALTAGGHGGRSAAT
CCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
GAAIGGLLGAGGGYLWSQHMQKQKEAMEQATKGTGIGVSQTADNRLKINIPSDASFDTNS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCC
YALKPSLKPVLDKLATTLQQNPVTSVNIIGHTDNTGSDAINNPLSVNRAKATQGYLASRG
EEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHCCCCCCCCHHHHHHCHHHHCC
VDINRIGIDGRGSREPVADNGTVSGRAMNRRVEIYVAEPAQAK
CCEEEECCCCCCCCCCCCCCCCCCCEEECEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]