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The map label for this gene is xylB [H]

Identifier: 34497317

GI number: 34497317

Start: 2021688

End: 2023193

Strand: Direct

Name: xylB [H]

Synonym: CV_1862

Alternate gene names: 34497317

Gene position: 2021688-2023193 (Clockwise)

Preceding gene: 34497316

Following gene: 34497319

Centisome position: 42.55

GC content: 60.09

Gene sequence:

>1506_bases
GTGGCTTTTTATATTGCGACGTTTGATATCGGTACGACAGAGGTCAAGGCAGCACTCGCTGACCGAGACGGGGGTTTGCA
TTTTCAGAGGTCGATCGCCTTGGAAACCTATGGCGATGGCAATGGCCCCGTCGAGCAGGATGCTGGAGATTGGTACGACG
CGGTGCAGCGCATTGCGTCCAGTTGGTGGCAGTCTGGCGTGGATGCGCGCAGGGTGTCCGCTATCGTCCTCAGCGGGCAA
ATGCAGAATTTTCTCCCGCTGGACCAAGATCATGAGCCGCTTCACCGCGCGGTGCTGTATTCGGACAAGAGGCCGCTCAA
AGAGGCTGAAGAAATCAATGCCCGTCATGGCGCCGACAACTTATGGAGCGCGCTGGAAAACCCGATGACGGCGGCTTCGA
TTCTGCCCAAGCTGGTCTTTTGGCGCGCCAGTTTTCCGCAGGCCTTTGGGCGCCTGAGGCATGTCGTGCTGGGGGCCAAG
GATTACGTTGTGCTGCGCTTGACGGGGCGGCATGCCACTGACCGAACCAATGCCTCGACCACTGGCCTTTATCGGCCTAA
AGACGATGCCTGGCATGTGGAACTGCTGGCCGACTATGGCTTTTCCTTGGATTTGATGCCTCGATTGCTTGAGCCAGGGG
AGCAGGTTGGAGGCGTGTCCGCGCTTGCGGCCCGGCAGACTGGCTTCGTGTCCGGCACGCCGGTGCTTTGCGGTTTGGGA
GATGCGGGGGCGGCTACTTTGGGTGTCGGCGTGTTGGATGACGAGGACGCCTATCTGCATTTGGGAACGACGGGCTGGCT
GGCGCGCTTGACGCAAACCGATCCCGTCGGCGACATGCCTGTCGGGACGATATTCAGGCTTGCGGGGATTATTGCAGGCA
AGACGCTGCAGGTGGCGCCGGTGCTGAATGCGGGCAATATTCTGCAATGGGCGTTGACGCTGGTCGGACACCGTCCGGGA
GAGGACTGCGCCGAATATTTCCACATGGCGGCTGCCGAGGTTCAGGGTGTGACGGTGCCTGATGGCTTGCTATTCGTTCC
GTATTTGCATGCAGAACGGTGTCCGGTCGAGCTGCCGGCGCCAAGAGGAGCGCTCTTGGGTGTCACGGGCGCAACCACCA
GGGCCCAGATCCTGCTGGCGGTATTGGAGGGCGCCGCATTGTCGCTGCGTTGGTGTGCCGAGCTGCTGGGCATGGAGAAA
GTAGGACTGCTCAAAGTGGTTGGGGGAGGCGCGAGGAGTGAGGCGTGGCTGAGGATGATCGCGGACAATCTGAATGTCAG
TTTGCTGGTCAAGCCGGATGCGCATCTGCATCCCCTGAGAGGATTGGCGGCGTTGGCTGCGGTGGAGTTGGAATGGAGCC
ATTCCATCCAGGATTTCCTTCGAGAAGCGGATCTGCGCGAGCCGGCCTCGAACATTCTGCATCCACAGCCATGCGATGAG
GGACGCCGCCGACGGAAATTCGAGCGATTCAAGCAATGCGTCGAAACCTTGGGAAGGTTGGACTAA

Upstream 100 bases:

>100_bases
GGCAAGTCGCGCCGACGCAGACAGTACAAGCCTTATGGCAAGTCGGCGCAACGCAGCGTCAGGGGTTTTGTCAGCGGCTC
TAAATCCAGAAAGGCGATGC

Downstream 100 bases:

>100_bases
GAGCGGCTGACAAAACCCCTGATGCTGAGTTGCGGCGACTTGCCGTACGGCTTGTACTGTTTGCGTCGGCAGGCCTTGCT
TCAGCCGTAAAACGGGGTGT

Product: xylulokinase

Products: NA

Alternate protein names: Xylulokinase [H]

Number of amino acids: Translated: 501; Mature: 500

Protein sequence:

>501_residues
MAFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWWQSGVDARRVSAIVLSGQ
MQNFLPLDQDHEPLHRAVLYSDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQAFGRLRHVVLGAK
DYVVLRLTGRHATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLG
DAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNILQWALTLVGHRPG
EDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELLGMEK
VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHPQPCDE
GRRRRKFERFKQCVETLGRLD

Sequences:

>Translated_501_residues
MAFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWWQSGVDARRVSAIVLSGQ
MQNFLPLDQDHEPLHRAVLYSDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQAFGRLRHVVLGAK
DYVVLRLTGRHATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLG
DAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNILQWALTLVGHRPG
EDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELLGMEK
VGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHPQPCDE
GRRRRKFERFKQCVETLGRLD
>Mature_500_residues
AFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWWQSGVDARRVSAIVLSGQM
QNFLPLDQDHEPLHRAVLYSDKRPLKEAEEINARHGADNLWSALENPMTAASILPKLVFWRASFPQAFGRLRHVVLGAKD
YVVLRLTGRHATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLGD
AGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAPVLNAGNILQWALTLVGHRPGE
DCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELLGMEKV
GLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHPQPCDEG
RRRRKFERFKQCVETLGRLD

Specific function: Unknown

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FGGY kinase family [H]

Homologues:

Organism=Escherichia coli, GI1789987, Length=497, Percent_Identity=27.5653923541247, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1790005, Length=506, Percent_Identity=24.1106719367589, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1787789, Length=451, Percent_Identity=24.390243902439, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789168, Length=456, Percent_Identity=24.5614035087719, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018483
- InterPro:   IPR018484
- InterPro:   IPR006000 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.17 [H]

Molecular weight: Translated: 54427; Mature: 54296

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS00445 FGGY_KINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIAS
CEEEEEEECCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
SWWQSGVDARRVSAIVLSGQMQNFLPLDQDHEPLHRAVLYSDKRPLKEAEEINARHGADN
HHHHCCCCHHHHEEEEEECCHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHH
LWSALENPMTAASILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRHATDRTNAST
HHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
TGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLG
CCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCHHHCCHHHHHHHHCCCCCCCCEEEECC
DAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAP
CCCCHHEEEEEECCCCCEEEECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
VLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPA
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCC
PRGALLGVTGATTRAQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMI
CCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH
ADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHPQPCDE
HCCCCEEEEECCCCCCCHHHHHHHHHHEEECHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
GRRRRKFERFKQCVETLGRLD
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFYIATFDIGTTEVKAALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIAS
EEEEEEECCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
SWWQSGVDARRVSAIVLSGQMQNFLPLDQDHEPLHRAVLYSDKRPLKEAEEINARHGADN
HHHHCCCCHHHHEEEEEECCHHHCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCHH
LWSALENPMTAASILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTGRHATDRTNAST
HHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
TGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAARQTGFVSGTPVLCGLG
CCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCHHHCCHHHHHHHHCCCCCCCCEEEECC
DAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKTLQVAP
CCCCHHEEEEEECCCCCEEEECCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEE
VLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYLHAERCPVELPA
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCC
PRGALLGVTGATTRAQILLAVLEGAALSLRWCAELLGMEKVGLLKVVGGGARSEAWLRMI
CCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH
ADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHSIQDFLREADLREPASNILHPQPCDE
HCCCCEEEEECCCCCCCHHHHHHHHHHEEECHHHHHHHHHHHHHCCCCHHHCCCCCCCCH
GRRRRKFERFKQCVETLGRLD
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 2994009 [H]