| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yeaH [C]
Identifier: 34497245
GI number: 34497245
Start: 1945830
End: 1947110
Strand: Direct
Name: yeaH [C]
Synonym: CV_1790
Alternate gene names: 34497245
Gene position: 1945830-1947110 (Clockwise)
Preceding gene: 34497244
Following gene: 34497246
Centisome position: 40.96
GC content: 61.2
Gene sequence:
>1281_bases ATGTCCCACATCATAGACAGACGCCTCAACGGCAAGAACAAGTCGGCGGTCAATCGCGAGCGCTTTCTTCGCCGTTTCAA GGCGCAAATCAAAGAAGCCGTCTCCAAGGCGATCAAGGGGCGGAGCATCACCGATATCGAAAGCGGGGAAAAGGTTTCCA TCCCGGTGAAGGACATCTCCGAGCCTTCGTTCCATCATGGCAAAGGCGGGGTGTGGGAGAACGTCCATCCCGGCAACGAG GAGTTCGTCAAGGGCGACCGTATTCCCCGGCCCCAGGGCGGCGCGGGCGGCGGCGGCAGCAAGGCCAGCCAGGACGGCGA GGGCGAGGATGATTTCGTGTTCCAGCTGTCGCGCGAGGAATTCATGAACGTATTCTTCGACGACCTGGCCCTGCCCAACC TGGTCAAGACCCAGCTGATGGGCATCGAGGAGATGAAGACGGTGCGCGCCGGCTATACCAACGACGGCACGCCGACCAAC ATCAACATCGTCCGCTCGCCACGCGGCGCGCTGGCGCGCCGCGTGGCGATGGCCGCGCCGACGCTCAGCAGCATAGACGA GGCTGAGGAGGAGCTCGATACGCTGATCGAGTCCGACGACGACAACGCGCTGGAAGTGCGGGACCGGCGGCAGCGCATCC ACCAGATGAAGGAGCGGCTGGCCAGCATCCCGTGGATAGACCCGTTCGACCTGCGCTACAACAACCGCGTCAAGCAGCCT AAACCGACCAGCCAGGCGGTGATGTTCTGCATCATGGACGTGTCCGGCTCGATGGACGAGCAGAAGAAGGACATGGCCAA GCGCTTCTTCATTCTGCTGTACATGTTTCTGCAGCGCAATTACGAGAAGATCGAAGTCGTGTTCATCCGCCACCATACCA GCGCGGTGGAGGTCAACGAGCAGGATTTCTTCCACTCCCGCGAGAGCGGCGGCACCGTGGTGTCGTCGGCGTTGAACCTG ATGAGCGACGTCATCCGCAAGCGCTACGCCAGCAGCGAGTGGAACATCTATGCCGCCCAGGCGTCTGACGGCGACAACTG GGACAGCGATTCGGCCAACTGCGGCCGCATCCTGGAGGAAAACCTGCTGCCGTACTGCCAGTATTTCGCTTATATCGAGA TCACCGAGGGCGAGCCGCAGAACCTGTGGTACGAGTACCTGAAGGTCAAGGCTCAGTGTCCGCAGTTCGCGATGCAGAAG ATTCGTTCCGCATCCGACATTTACCCGGTGTTCCGCGAACTGTTCAAGCGCCAGCCGGCGAACGGGAGGGTGTCGGCATG A
Upstream 100 bases:
>100_bases AGATGGGGCGGCGACAAGGAGACACAACCGCGCGCGGCGATCGGCCATCGGCTCCGGAGACGGAGCCGGCGGCCCCTCGC AGCGCGCCAGAGAGGTGGCT
Downstream 100 bases:
>100_bases AACGGACGCGCAAGGGGGAAGGCTCGACGCCGATTTCCACGGGGTCGGAATGGACGTTCGATCTGGTGGGCGAATACGAC CGCGCGATCCGCGAGATCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 426; Mature: 425
Protein sequence:
>426_residues MSHIIDRRLNGKNKSAVNRERFLRRFKAQIKEAVSKAIKGRSITDIESGEKVSIPVKDISEPSFHHGKGGVWENVHPGNE EFVKGDRIPRPQGGAGGGGSKASQDGEGEDDFVFQLSREEFMNVFFDDLALPNLVKTQLMGIEEMKTVRAGYTNDGTPTN INIVRSPRGALARRVAMAAPTLSSIDEAEEELDTLIESDDDNALEVRDRRQRIHQMKERLASIPWIDPFDLRYNNRVKQP KPTSQAVMFCIMDVSGSMDEQKKDMAKRFFILLYMFLQRNYEKIEVVFIRHHTSAVEVNEQDFFHSRESGGTVVSSALNL MSDVIRKRYASSEWNIYAAQASDGDNWDSDSANCGRILEENLLPYCQYFAYIEITEGEPQNLWYEYLKVKAQCPQFAMQK IRSASDIYPVFRELFKRQPANGRVSA
Sequences:
>Translated_426_residues MSHIIDRRLNGKNKSAVNRERFLRRFKAQIKEAVSKAIKGRSITDIESGEKVSIPVKDISEPSFHHGKGGVWENVHPGNE EFVKGDRIPRPQGGAGGGGSKASQDGEGEDDFVFQLSREEFMNVFFDDLALPNLVKTQLMGIEEMKTVRAGYTNDGTPTN INIVRSPRGALARRVAMAAPTLSSIDEAEEELDTLIESDDDNALEVRDRRQRIHQMKERLASIPWIDPFDLRYNNRVKQP KPTSQAVMFCIMDVSGSMDEQKKDMAKRFFILLYMFLQRNYEKIEVVFIRHHTSAVEVNEQDFFHSRESGGTVVSSALNL MSDVIRKRYASSEWNIYAAQASDGDNWDSDSANCGRILEENLLPYCQYFAYIEITEGEPQNLWYEYLKVKAQCPQFAMQK IRSASDIYPVFRELFKRQPANGRVSA >Mature_425_residues SHIIDRRLNGKNKSAVNRERFLRRFKAQIKEAVSKAIKGRSITDIESGEKVSIPVKDISEPSFHHGKGGVWENVHPGNEE FVKGDRIPRPQGGAGGGGSKASQDGEGEDDFVFQLSREEFMNVFFDDLALPNLVKTQLMGIEEMKTVRAGYTNDGTPTNI NIVRSPRGALARRVAMAAPTLSSIDEAEEELDTLIESDDDNALEVRDRRQRIHQMKERLASIPWIDPFDLRYNNRVKQPK PTSQAVMFCIMDVSGSMDEQKKDMAKRFFILLYMFLQRNYEKIEVVFIRHHTSAVEVNEQDFFHSRESGGTVVSSALNLM SDVIRKRYASSEWNIYAAQASDGDNWDSDSANCGRILEENLLPYCQYFAYIEITEGEPQNLWYEYLKVKAQCPQFAMQKI RSASDIYPVFRELFKRQPANGRVSA
Specific function: Unknown
COG id: COG2718
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0229 family [H]
Homologues:
Organism=Escherichia coli, GI1788084, Length=426, Percent_Identity=56.5727699530516, Blast_Score=493, Evalue=1e-140,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006698 [H]
Pfam domain/function: PF04285 DUF444 [H]
EC number: NA
Molecular weight: Translated: 48511; Mature: 48380
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHIIDRRLNGKNKSAVNRERFLRRFKAQIKEAVSKAIKGRSITDIESGEKVSIPVKDIS CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHCC EPSFHHGKGGVWENVHPGNEEFVKGDRIPRPQGGAGGGGSKASQDGEGEDDFVFQLSREE CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEECHHH FMNVFFDDLALPNLVKTQLMGIEEMKTVRAGYTNDGTPTNINIVRSPRGALARRVAMAAP HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC TLSSIDEAEEELDTLIESDDDNALEVRDRRQRIHQMKERLASIPWIDPFDLRYNNRVKQP CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC KPTSQAVMFCIMDVSGSMDEQKKDMAKRFFILLYMFLQRNYEKIEVVFIRHHTSAVEVNE CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEECH QDFFHSRESGGTVVSSALNLMSDVIRKRYASSEWNIYAAQASDGDNWDSDSANCGRILEE HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH NLLPYCQYFAYIEITEGEPQNLWYEYLKVKAQCPQFAMQKIRSASDIYPVFRELFKRQPA HHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHCCCC NGRVSA CCCCCC >Mature Secondary Structure SHIIDRRLNGKNKSAVNRERFLRRFKAQIKEAVSKAIKGRSITDIESGEKVSIPVKDIS CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHCC EPSFHHGKGGVWENVHPGNEEFVKGDRIPRPQGGAGGGGSKASQDGEGEDDFVFQLSREE CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEECHHH FMNVFFDDLALPNLVKTQLMGIEEMKTVRAGYTNDGTPTNINIVRSPRGALARRVAMAAP HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC TLSSIDEAEEELDTLIESDDDNALEVRDRRQRIHQMKERLASIPWIDPFDLRYNNRVKQP CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC KPTSQAVMFCIMDVSGSMDEQKKDMAKRFFILLYMFLQRNYEKIEVVFIRHHTSAVEVNE CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEECH QDFFHSRESGGTVVSSALNLMSDVIRKRYASSEWNIYAAQASDGDNWDSDSANCGRILEE HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHH NLLPYCQYFAYIEITEGEPQNLWYEYLKVKAQCPQFAMQKIRSASDIYPVFRELFKRQPA HHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHCCCC NGRVSA CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA