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The map label for this gene is desD [H]

Identifier: 34497099

GI number: 34497099

Start: 1781333

End: 1782442

Strand: Direct

Name: desD [H]

Synonym: CV_1644

Alternate gene names: 34497099

Gene position: 1781333-1782442 (Clockwise)

Preceding gene: 34497098

Following gene: 34497100

Centisome position: 37.49

GC content: 62.52

Gene sequence:

>1110_bases
ATGTCGTCCCGTATCACCTTTTCGGCCCGAGGGCCGTTTTTCGAAACGCTGAAGTCCCGGGTTGACGCCTACTTTCAGCA
AACCGGCCAGCGCCACACCGGCAACCGCCTGTTGCATTTCAAGACCGCGTTCGCTTACGCGCTGGCCGGCTTCAGCTACG
CGGCGCTGGTGTGGGGCGCGGAGCATTGGTGGTCGGCGCTGCTGGCCGGCTTCGGCCTGGCGCAGGGCCTGGTGCTGATC
GCCTTCAACGTGATGCACGACGGCGCCCACGGCAGCTATTCGCGCAAACGCTGGGTGAATTGGCTGATGGGCTCCAGCAT
GGAGGTGCTGGGCGGCAGCCAGAGCTTGTGGCAGCAGAAGCACAATGTGCTGCACCACACTTACACCAATGTGGACGGCA
AGGACGACGACATCGCGCTGGGCAGCCTGATGCGCTTGTCGCCGGCCACGCCGTGGCGGCCCTGGCACAGGCTGCAGCAT
TGGTACGCGGTGTTCCTGTATAGCCTGTTGACGCTGTTCTGGTTGTTGTTCAGCGACTGGCACAAGATGATACGCGGCAA
GATCGGCGATACGCCGCTGCCGAAGCGGGCATGGTGGGAATGGCCTTATTTTGTGGCCACCAAGTTGCTGTACGTCGGCT
ACACCCTGGTCTTGCCGGCCTTGTACCACCCGTTTTCGCATGTGTTGCTGGCTTTCATCGGCGTGCACCTGCTGTTCGGC
CTGACGCTGTCGGTGGTGTTCCAGTTGGCGCACACGGTGGAAGGCGCGGCTTTCCCGCTGCCGGGAGACGACGGCAAGAT
GGCCGACGAGTGGGCGGTGCATCAGCTGAAGACCACGGCCAATTTCGCCTGCGGCAACCGCCTGGTGACGTTTTACATGG
GCGGCCTGAATTTCCAGGTCGAGCATCATTTGTTCCGCAAGACCAGCCATGTCCACTACCCGGCGCTGAGCCGGATCGTG
GCCGATGCCTGCCGGGAGCACGGCATGCCCTACCAGTCGTTTCAGTCGGTATGGGCGGCGATGAAGGCGCATTTCCGCTT
TTTGAAACAGATGGGGCGACAACCGGCCGCGCTGAGCGCGGGCCCTGTTGCTGCGGCAACCAGAATTTGA

Upstream 100 bases:

>100_bases
GCGCCAGATGACCGGGCCAAGCCCTCCGGGAAGCCCCGGGGCTTGCTCCGGTCATCGGCGTTTGCGTGACCGCCTTCAGG
TTTGGTCTTTTGGAGAGTGC

Downstream 100 bases:

>100_bases
GAGTGACAGCAAGATGTCAAAAAGAGACTACTACGATGTGCTCGGCGTCAATCGCGACGCTTCCGACGACGACATCAAGA
AGGCTTACCGCAAGCTGGCG

Product: linoleoyl-CoA desaturase

Products: NA

Alternate protein names: Delta(6)-desaturase [H]

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSSRITFSARGPFFETLKSRVDAYFQQTGQRHTGNRLLHFKTAFAYALAGFSYAALVWGAEHWWSALLAGFGLAQGLVLI
AFNVMHDGAHGSYSRKRWVNWLMGSSMEVLGGSQSLWQQKHNVLHHTYTNVDGKDDDIALGSLMRLSPATPWRPWHRLQH
WYAVFLYSLLTLFWLLFSDWHKMIRGKIGDTPLPKRAWWEWPYFVATKLLYVGYTLVLPALYHPFSHVLLAFIGVHLLFG
LTLSVVFQLAHTVEGAAFPLPGDDGKMADEWAVHQLKTTANFACGNRLVTFYMGGLNFQVEHHLFRKTSHVHYPALSRIV
ADACREHGMPYQSFQSVWAAMKAHFRFLKQMGRQPAALSAGPVAAATRI

Sequences:

>Translated_369_residues
MSSRITFSARGPFFETLKSRVDAYFQQTGQRHTGNRLLHFKTAFAYALAGFSYAALVWGAEHWWSALLAGFGLAQGLVLI
AFNVMHDGAHGSYSRKRWVNWLMGSSMEVLGGSQSLWQQKHNVLHHTYTNVDGKDDDIALGSLMRLSPATPWRPWHRLQH
WYAVFLYSLLTLFWLLFSDWHKMIRGKIGDTPLPKRAWWEWPYFVATKLLYVGYTLVLPALYHPFSHVLLAFIGVHLLFG
LTLSVVFQLAHTVEGAAFPLPGDDGKMADEWAVHQLKTTANFACGNRLVTFYMGGLNFQVEHHLFRKTSHVHYPALSRIV
ADACREHGMPYQSFQSVWAAMKAHFRFLKQMGRQPAALSAGPVAAATRI
>Mature_368_residues
SSRITFSARGPFFETLKSRVDAYFQQTGQRHTGNRLLHFKTAFAYALAGFSYAALVWGAEHWWSALLAGFGLAQGLVLIA
FNVMHDGAHGSYSRKRWVNWLMGSSMEVLGGSQSLWQQKHNVLHHTYTNVDGKDDDIALGSLMRLSPATPWRPWHRLQHW
YAVFLYSLLTLFWLLFSDWHKMIRGKIGDTPLPKRAWWEWPYFVATKLLYVGYTLVLPALYHPFSHVLLAFIGVHLLFGL
TLSVVFQLAHTVEGAAFPLPGDDGKMADEWAVHQLKTTANFACGNRLVTFYMGGLNFQVEHHLFRKTSHVHYPALSRIVA
DACREHGMPYQSFQSVWAAMKAHFRFLKQMGRQPAALSAGPVAAATRI

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: =1.14.19.3 [H]

Molecular weight: Translated: 41894; Mature: 41763

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHCCC
>Mature Secondary Structure 
SSRITFSARGPFFETLKSRVDAYFQQTGQRHTGNRLLHFKTAFAYALAGFSYAALVWGA
CCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH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CCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8389613; 8905231 [H]