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The map label for this gene is sdsB [H]

Identifier: 34496890

GI number: 34496890

Start: 1517700

End: 1518614

Strand: Reverse

Name: sdsB [H]

Synonym: CV_1435

Alternate gene names: 34496890

Gene position: 1518614-1517700 (Counterclockwise)

Preceding gene: 34496895

Following gene: 34496887

Centisome position: 31.96

GC content: 69.62

Gene sequence:

>915_bases
ATGAACCGCAAACCGGCGCTGGGCCAGGTCAGCGATTTCGATATCCGGCTGCTGCGGCTGTTCCGCGCGGTGGCGGAGTG
CGGCGGCTTCTCCGCCGCCGAGGGCGTGCTGGGCATCAGCCGCTCCGCCATCAGCCTGCAGATGGGCGATCTGGAAAAAC
GCCTGGGCATCCGGCTGTGCCAGCGCGGCCGCGCCGGCTTCGCCCTCACCGACGAGGGACGCGAGGTGCTGCGCGCCAGC
CAGACGCTGCTGGCGGCGCTGGAGGATTTCCGCAGCGAGGTGAATCTGCTGCACCGCCAGCTGCGCGGCGAATTGAACAT
CGGGATCATCAACAACCTGGTGACGCTGCCCAAGATGCGCATCACCCAGGCGCTGCGCGCGCTGGCCAAGCAGGGACCGG
ACGTGCGCATCAATATCGGCATGATGACGCCCAGCGACATCGAAACCGGGCTGATGGACGGCCAGCTGCACGCCGGCGTG
GTGCCGCTGATCCAGCCCTTGTCCGGGCTCGACTACCTGCCGCTGTACGACGAGCGCTCGCAGCTCTACTGCAGCCGCGA
GCATCCGCTGTTCAGCCGGCCGGACGACGCCTTGACGGAAGCGGACCTCGCCGCCGCCGACGCCGTCGCGCCCGGCTACC
GCTTGCCGCCGCAGGCGCAGGCGCTGCAACAGCGGCTCACGCCCGCCGCCACCGCCTCCGACCGCGAAGGCATCGCCTTT
TTGATCCTCAGCGGCCGCTACATCGGCTACCTGCCGGATCATTTCGCCGCCGGCTGGGTGGCGCAGGGCATGATGCGGCC
GCTGCTGCCGGACGTCTGTTCCTACGACGCGCCGCTGGCGCTGGCGGTGCGCAAGGGCCGACGGGCCAACCTGGTGCTGG
AACGGTTTCTGCAGGAGCTGGAGCGCAGCGCCTGA

Upstream 100 bases:

>100_bases
ATCGCAAGCCTCGCTGGCAGGAATATAGACACAGCATGCCGCGGACATTGCGTGAGTTAAATGCTATCTTTCTTACGTTC
AGATTAGTGAATATCAAACC

Downstream 100 bases:

>100_bases
GCCTCAAGCCAACAACAGCAATGCGATGCCCAGCGCCGCCGGCAGCCCCTGCACCAACAAGATGCGTCGGTTGGCGGTGG
CGGCGCCGAACACGCCGGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNRKPALGQVSDFDIRLLRLFRAVAECGGFSAAEGVLGISRSAISLQMGDLEKRLGIRLCQRGRAGFALTDEGREVLRAS
QTLLAALEDFRSEVNLLHRQLRGELNIGIINNLVTLPKMRITQALRALAKQGPDVRINIGMMTPSDIETGLMDGQLHAGV
VPLIQPLSGLDYLPLYDERSQLYCSREHPLFSRPDDALTEADLAAADAVAPGYRLPPQAQALQQRLTPAATASDREGIAF
LILSGRYIGYLPDHFAAGWVAQGMMRPLLPDVCSYDAPLALAVRKGRRANLVLERFLQELERSA

Sequences:

>Translated_304_residues
MNRKPALGQVSDFDIRLLRLFRAVAECGGFSAAEGVLGISRSAISLQMGDLEKRLGIRLCQRGRAGFALTDEGREVLRAS
QTLLAALEDFRSEVNLLHRQLRGELNIGIINNLVTLPKMRITQALRALAKQGPDVRINIGMMTPSDIETGLMDGQLHAGV
VPLIQPLSGLDYLPLYDERSQLYCSREHPLFSRPDDALTEADLAAADAVAPGYRLPPQAQALQQRLTPAATASDREGIAF
LILSGRYIGYLPDHFAAGWVAQGMMRPLLPDVCSYDAPLALAVRKGRRANLVLERFLQELERSA
>Mature_304_residues
MNRKPALGQVSDFDIRLLRLFRAVAECGGFSAAEGVLGISRSAISLQMGDLEKRLGIRLCQRGRAGFALTDEGREVLRAS
QTLLAALEDFRSEVNLLHRQLRGELNIGIINNLVTLPKMRITQALRALAKQGPDVRINIGMMTPSDIETGLMDGQLHAGV
VPLIQPLSGLDYLPLYDERSQLYCSREHPLFSRPDDALTEADLAAADAVAPGYRLPPQAQALQQRLTPAATASDREGIAF
LILSGRYIGYLPDHFAAGWVAQGMMRPLLPDVCSYDAPLALAVRKGRRANLVLERFLQELERSA

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790262, Length=193, Percent_Identity=28.4974093264249, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786713, Length=292, Percent_Identity=28.0821917808219, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=190, Percent_Identity=28.4210526315789, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33338; Mature: 33338

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKPALGQVSDFDIRLLRLFRAVAECGGFSAAEGVLGISRSAISLQMGDLEKRLGIRLC
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHEEEHHHHHHHHHHHHH
QRGRAGFALTDEGREVLRASQTLLAALEDFRSEVNLLHRQLRGELNIGIINNLVTLPKMR
HCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHH
ITQALRALAKQGPDVRINIGMMTPSDIETGLMDGQLHAGVVPLIQPLSGLDYLPLYDERS
HHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCCHHCCHHHHHHHHCCCCCCCCCCCCH
QLYCSREHPLFSRPDDALTEADLAAADAVAPGYRLPPQAQALQQRLTPAATASDREGIAF
HEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEE
LILSGRYIGYLPDHFAAGWVAQGMMRPLLPDVCSYDAPLALAVRKGRRANLVLERFLQEL
EEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHH
ERSA
HHCC
>Mature Secondary Structure
MNRKPALGQVSDFDIRLLRLFRAVAECGGFSAAEGVLGISRSAISLQMGDLEKRLGIRLC
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHEEEHHHHHHHHHHHHH
QRGRAGFALTDEGREVLRASQTLLAALEDFRSEVNLLHRQLRGELNIGIINNLVTLPKMR
HCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHH
ITQALRALAKQGPDVRINIGMMTPSDIETGLMDGQLHAGVVPLIQPLSGLDYLPLYDERS
HHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCCHHCCHHHHHHHHCCCCCCCCCCCCH
QLYCSREHPLFSRPDDALTEADLAAADAVAPGYRLPPQAQALQQRLTPAATASDREGIAF
HEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEE
LILSGRYIGYLPDHFAAGWVAQGMMRPLLPDVCSYDAPLALAVRKGRRANLVLERFLQEL
EEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHH
ERSA
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]