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The map label for this gene is rtcB [C]

Identifier: 34496880

GI number: 34496880

Start: 1503319

End: 1504752

Strand: Reverse

Name: rtcB [C]

Synonym: CV_1425

Alternate gene names: 34496880

Gene position: 1504752-1503319 (Counterclockwise)

Preceding gene: 34496883

Following gene: 34496879

Centisome position: 31.67

GC content: 62.2

Gene sequence:

>1434_bases
ATGACCGGAGGGGTAACTGTACCTATTGCATCAGATGCCATCATGACCTCTATTTCCCGCTTGAAAGCCGCCCTGCAACG
CCAGGGCATTCATGTTGAACGTACCAACAATATTTACCGGCTGCGCACTGCCGACTCCGAAGCCGCCGTGCTGCTGCCGG
ATAGCCTCCCTTTGGAAGAAAAGGCTGTCAAACAGCTACTCGGTTTCGCAGCCACCCGCTCTGCCGATGGCCACCACGGC
GTATGCAAGGCCTGCGCCACACCGGATTTCCACCCAGGAGGCATCGCGCCAGTTGGCGCCGTAGTGGCCACCGATCCGGA
ATTCGTCATTCCCGCCGCTATAGGCACCGATATCAACTGCGGCTTGCGCCTGGTGAGCACAGGCCTCCAGTATGAGACCA
TCGCGCCACACAAAGACGCGCTGGAATCTCGGCTAACCCATGTGCTGCTGGATAACGGCCGCAACCTGCCGGTATTCAGC
CGCGGCTTTGCCGCGCTATTCGACGCAGGACCCGATGCCTTCATCGACCTGCTGCCACGCGAAGGCCTGTGGGCCGGCGT
AAACAGAACCCGCCTGCTGAATGAGCTGGCGGCCTGCGTCAGCCTGGATAGCTTTGACTCCGCAGCACGCTACGCGCCAG
AGGCGCTGGTAGGCACACGCGAACTGATACGCGACCCTAGCCTGGGAACCCAAGGCGCGGGCAATCACTTCGTTGAGCTC
CAAGTCGTGGACCAAGTGCTGGACCGCCACGCGGCTTACGCCGCCGGCTTGGCCAAAGACGATGTGGTGTTCATGATCCA
TACCGGATCCCGCGATGTCGGCTTCTATGTCGGCAAGCGCTGGATGAACAAGGCGCGTGCGGCTTGGCCTCGCCAGATGA
AGTATCCGGAGCATGGCTTGTTTGGCCTATCCGGTGCGCTGGCGGATGAATATTTGATCGCCATGGGCACCGCTGCCCGC
TATGCCTGGGCCAACCGCATGGCACTGACCGAAATGGTGCGCTCAGCCATTGAGGCAACGCTGGGCCAGTCCAATAGCCG
CTTGGTGGTTGACGTGCCGCATAACGTGGTACTGCGAGAACAGGGCCTCAACATCCACCGCAAGGGTGCCACACCGGCGC
GCGAAGGCGAGCTGGCGTTGATACCCGGATCCATGGGCGATTTCAGCTATGTCGCAGCCGGTCTTGGCCATCCCGACTGG
CTATGGTCCTGCAGCCATGGCGCGGGCCGCAGCATGCGCCGCCAGGCGATGAGGCGACTGGCGACGGAGGTCGCGCCCGG
CAGTTGGCAATGCGTGACCTTGCGCGAGGAAAGGCGCATAGAAGAAGCACCGCATGCCTACAAGCCCGTCGGCCCCGTGA
TCGCCGCGCAAGAAGAAGCCGGACTGATCAAGGCCGCGGTCCGACTGCGCCCCTGGCTGACGTTCAAAGCCTGA

Upstream 100 bases:

>100_bases
GAAACATCCTACTCTATGCCATTTCCACCAGCACATCCTCGTGCTATGATCCCCACCCCACCCCTCCTGGCGCTGCTGCT
GGAGGTACCTGCCCATCCGG

Downstream 100 bases:

>100_bases
CTCAGAACAATGCGATATGCCGAATACAAGCTGGACAATAATGCTTCAAGCATTCACCATCGTGCCCGGTACGATTTGGA
CTAGCCATTTGACTATTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MTGGVTVPIASDAIMTSISRLKAALQRQGIHVERTNNIYRLRTADSEAAVLLPDSLPLEEKAVKQLLGFAATRSADGHHG
VCKACATPDFHPGGIAPVGAVVATDPEFVIPAAIGTDINCGLRLVSTGLQYETIAPHKDALESRLTHVLLDNGRNLPVFS
RGFAALFDAGPDAFIDLLPREGLWAGVNRTRLLNELAACVSLDSFDSAARYAPEALVGTRELIRDPSLGTQGAGNHFVEL
QVVDQVLDRHAAYAAGLAKDDVVFMIHTGSRDVGFYVGKRWMNKARAAWPRQMKYPEHGLFGLSGALADEYLIAMGTAAR
YAWANRMALTEMVRSAIEATLGQSNSRLVVDVPHNVVLREQGLNIHRKGATPAREGELALIPGSMGDFSYVAAGLGHPDW
LWSCSHGAGRSMRRQAMRRLATEVAPGSWQCVTLREERRIEEAPHAYKPVGPVIAAQEEAGLIKAAVRLRPWLTFKA

Sequences:

>Translated_477_residues
MTGGVTVPIASDAIMTSISRLKAALQRQGIHVERTNNIYRLRTADSEAAVLLPDSLPLEEKAVKQLLGFAATRSADGHHG
VCKACATPDFHPGGIAPVGAVVATDPEFVIPAAIGTDINCGLRLVSTGLQYETIAPHKDALESRLTHVLLDNGRNLPVFS
RGFAALFDAGPDAFIDLLPREGLWAGVNRTRLLNELAACVSLDSFDSAARYAPEALVGTRELIRDPSLGTQGAGNHFVEL
QVVDQVLDRHAAYAAGLAKDDVVFMIHTGSRDVGFYVGKRWMNKARAAWPRQMKYPEHGLFGLSGALADEYLIAMGTAAR
YAWANRMALTEMVRSAIEATLGQSNSRLVVDVPHNVVLREQGLNIHRKGATPAREGELALIPGSMGDFSYVAAGLGHPDW
LWSCSHGAGRSMRRQAMRRLATEVAPGSWQCVTLREERRIEEAPHAYKPVGPVIAAQEEAGLIKAAVRLRPWLTFKA
>Mature_476_residues
TGGVTVPIASDAIMTSISRLKAALQRQGIHVERTNNIYRLRTADSEAAVLLPDSLPLEEKAVKQLLGFAATRSADGHHGV
CKACATPDFHPGGIAPVGAVVATDPEFVIPAAIGTDINCGLRLVSTGLQYETIAPHKDALESRLTHVLLDNGRNLPVFSR
GFAALFDAGPDAFIDLLPREGLWAGVNRTRLLNELAACVSLDSFDSAARYAPEALVGTRELIRDPSLGTQGAGNHFVELQ
VVDQVLDRHAAYAAGLAKDDVVFMIHTGSRDVGFYVGKRWMNKARAAWPRQMKYPEHGLFGLSGALADEYLIAMGTAARY
AWANRMALTEMVRSAIEATLGQSNSRLVVDVPHNVVLREQGLNIHRKGATPAREGELALIPGSMGDFSYVAAGLGHPDWL
WSCSHGAGRSMRRQAMRRLATEVAPGSWQCVTLREERRIEEAPHAYKPVGPVIAAQEEAGLIKAAVRLRPWLTFKA

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=440, Percent_Identity=29.3181818181818, Blast_Score=154, Evalue=2e-37,
Organism=Escherichia coli, GI2367224, Length=465, Percent_Identity=28.8172043010753, Blast_Score=137, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17506665, Length=467, Percent_Identity=31.4775160599572, Blast_Score=174, Evalue=8e-44,
Organism=Drosophila melanogaster, GI24585217, Length=468, Percent_Identity=29.0598290598291, Blast_Score=140, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 51568; Mature: 51436

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGGVTVPIASDAIMTSISRLKAALQRQGIHVERTNNIYRLRTADSEAAVLLPDSLPLEE
CCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCEEECCCCCCCHH
KAVKQLLGFAATRSADGHHGVCKACATPDFHPGGIAPVGAVVATDPEFVIPAAIGTDINC
HHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEHHCCCCCCC
GLRLVSTGLQYETIAPHKDALESRLTHVLLDNGRNLPVFSRGFAALFDAGPDAFIDLLPR
CHHEECCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHCCCCHHHHHHCCC
EGLWAGVNRTRLLNELAACVSLDSFDSAARYAPEALVGTRELIRDPSLGTQGAGNHFVEL
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCHHHHCCCCCCCCCCCCCEEEH
QVVDQVLDRHAAYAAGLAKDDVVFMIHTGSRDVGFYVGKRWMNKARAAWPRQMKYPEHGL
HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCCC
FGLSGALADEYLIAMGTAARYAWANRMALTEMVRSAIEATLGQSNSRLVVDVPHNVVLRE
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEC
QGLNIHRKGATPAREGELALIPGSMGDFSYVAAGLGHPDWLWSCSHGAGRSMRRQAMRRL
CCCCEEECCCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
ATEVAPGSWQCVTLREERRIEEAPHAYKPVGPVIAAQEEAGLIKAAVRLRPWLTFKA
HHHCCCCCEEEEEEHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure 
TGGVTVPIASDAIMTSISRLKAALQRQGIHVERTNNIYRLRTADSEAAVLLPDSLPLEE
CCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCEEECCCCCCCHH
KAVKQLLGFAATRSADGHHGVCKACATPDFHPGGIAPVGAVVATDPEFVIPAAIGTDINC
HHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEHHCCCCCCC
GLRLVSTGLQYETIAPHKDALESRLTHVLLDNGRNLPVFSRGFAALFDAGPDAFIDLLPR
CHHEECCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHCCCCHHHHHHCCC
EGLWAGVNRTRLLNELAACVSLDSFDSAARYAPEALVGTRELIRDPSLGTQGAGNHFVEL
CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCHHHHCCCCCCCCCCCCCEEEH
QVVDQVLDRHAAYAAGLAKDDVVFMIHTGSRDVGFYVGKRWMNKARAAWPRQMKYPEHGL
HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCCC
FGLSGALADEYLIAMGTAARYAWANRMALTEMVRSAIEATLGQSNSRLVVDVPHNVVLRE
CCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEC
QGLNIHRKGATPAREGELALIPGSMGDFSYVAAGLGHPDWLWSCSHGAGRSMRRQAMRRL
CCCCEEECCCCCCCCCCEEEECCCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHH
ATEVAPGSWQCVTLREERRIEEAPHAYKPVGPVIAAQEEAGLIKAAVRLRPWLTFKA
HHHCCCCCEEEEEEHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA