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The map label for this gene is rarA [H]

Identifier: 34496831

GI number: 34496831

Start: 1451057

End: 1452388

Strand: Reverse

Name: rarA [H]

Synonym: CV_1376

Alternate gene names: 34496831

Gene position: 1452388-1451057 (Counterclockwise)

Preceding gene: 34496833

Following gene: 34496830

Centisome position: 30.57

GC content: 65.77

Gene sequence:

>1332_bases
ATGTCCGATCTTTTTTCCGTCGAACCGCAAAAACCGCTGGCCGAGGCCTTGCGTCCTCAGGCGCTCGATCAGGTGATCGG
CCAGCAGCACCTGATCGGCCCGGGCAAGCCGCTGAGCCTGGCGGTGGCATCCGGCAAGCCGCACTCGATGATATTGTGGG
GCCCGCCCGGCGTGGGCAAGACCACGCTGGCGCGCATTCTGGCCGCCAGCTTCGACGCCGAGTTCATCCCGATCTCGGCG
GTGTTCGCCGGCGTCAAGGACATCCGCGAGGCGGTGGAAAAGGCGCATGCCGTGCTGCAGCGTTCCGGCCGGCGCACCAT
CCTGTTCGTCGACGAGGTCCACCGCTTCAACAAGAGCCAGCAGGACGCCTTCCTGCCCTTCGTCGAATCCGGCCTGATCA
CCTTCATCGGCGCCACCACCGAAAACCCGTCGTTCGAAGTCAATTCCGCGCTGCTGTCGCGCGCCCAGGTCTATGTGCTG
AACAGCCTGAGCGAGGACGAGCTGAAGCAGTTGTTCGCGCGCGCGCGGACCGAAGGCGCGCTGGACGGGCTGAATTTCGA
CGATGCGGCCGTCTCCACGCTGACCGGCTACGCCGACGGCGACGCGCGCCGCTTCCTGAACCTGCTGGAGCAAACCCGCA
CCGCGGCGCAGGCGCGCGGCGTCGCCGACATCGATCCCGGCTTCCTGGAAGAGGTGCTGACGCTGAACGCGCGCCGCTTC
GACAAGGGCGGCGACGCTTTCTACGACCAGATCTCGGCGCTGCACAAATCGGTGCGCGGCTCCAACCCGGACGCGGCGCT
GTACTGGCTCAGCCGGATGCTGGACGGCGGCGCCGACCCGCGCTACCTGGCGCGCCGCATCGTGCGCATGGCCTGGGAGG
ACATCGGCCTGGCCGACCCGCGCGCGATGCAGATCGCCAACGACGCCGCCCTCACCTACGAAAGGCTGGGCAGCCCGGAA
GGCGAGCTTGCGCTGGGACAAGCGGTGATTTATCTGGCGGTGGCCGCCAAGAGCAATGCCGGATACAAGGCGTATAATGA
GGCCCGCGCCTTCGTCAAACAGGACAAATCCCGCCCGGTGCCGGTACACTTGCGGAACGCGCCGACCCGCCTGATGAAGG
AACTGGGCTACGGCCACGCCTACCGCTACGCGCACGATGAACCCCACGGCTACGCCGCCGGGGAAACCTATCTTCCGGAG
GGGCTGGAAGACATCGAGTGGTACCGTCCGGTGCCGCGCGGGCTGGAAAGCAAGATTCAGGATAAACTGGCCTTTTTGCG
TCAGCTGGATGCAGACGCCCAGCAAGATCCCGATAGTGAAAAACAGGAATAA

Upstream 100 bases:

>100_bases
TCCATCGACATGCAAGCAAAAAGCGCCTGGCCGGCGCTTTTTTCATGCCTGTCCCCAACTGGTATACTGTTTCTCCGCCC
CATCCCGCCGAAATCGCGCC

Downstream 100 bases:

>100_bases
TCATGCTCGACATCAATCTACTTCGTAATGACATCGAAGCGGTCGCCGCCCGTCTGGCCGGCCGCGGCTACACCCTGGAC
ACCGCAGCGTTCAATCAGCT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSDLFSVEPQKPLAEALRPQALDQVIGQQHLIGPGKPLSLAVASGKPHSMILWGPPGVGKTTLARILAASFDAEFIPISA
VFAGVKDIREAVEKAHAVLQRSGRRTILFVDEVHRFNKSQQDAFLPFVESGLITFIGATTENPSFEVNSALLSRAQVYVL
NSLSEDELKQLFARARTEGALDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQARGVADIDPGFLEEVLTLNARRF
DKGGDAFYDQISALHKSVRGSNPDAALYWLSRMLDGGADPRYLARRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPE
GELALGQAVIYLAVAAKSNAGYKAYNEARAFVKQDKSRPVPVHLRNAPTRLMKELGYGHAYRYAHDEPHGYAAGETYLPE
GLEDIEWYRPVPRGLESKIQDKLAFLRQLDADAQQDPDSEKQE

Sequences:

>Translated_443_residues
MSDLFSVEPQKPLAEALRPQALDQVIGQQHLIGPGKPLSLAVASGKPHSMILWGPPGVGKTTLARILAASFDAEFIPISA
VFAGVKDIREAVEKAHAVLQRSGRRTILFVDEVHRFNKSQQDAFLPFVESGLITFIGATTENPSFEVNSALLSRAQVYVL
NSLSEDELKQLFARARTEGALDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQARGVADIDPGFLEEVLTLNARRF
DKGGDAFYDQISALHKSVRGSNPDAALYWLSRMLDGGADPRYLARRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPE
GELALGQAVIYLAVAAKSNAGYKAYNEARAFVKQDKSRPVPVHLRNAPTRLMKELGYGHAYRYAHDEPHGYAAGETYLPE
GLEDIEWYRPVPRGLESKIQDKLAFLRQLDADAQQDPDSEKQE
>Mature_442_residues
SDLFSVEPQKPLAEALRPQALDQVIGQQHLIGPGKPLSLAVASGKPHSMILWGPPGVGKTTLARILAASFDAEFIPISAV
FAGVKDIREAVEKAHAVLQRSGRRTILFVDEVHRFNKSQQDAFLPFVESGLITFIGATTENPSFEVNSALLSRAQVYVLN
SLSEDELKQLFARARTEGALDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQARGVADIDPGFLEEVLTLNARRFD
KGGDAFYDQISALHKSVRGSNPDAALYWLSRMLDGGADPRYLARRIVRMAWEDIGLADPRAMQIANDAALTYERLGSPEG
ELALGQAVIYLAVAAKSNAGYKAYNEARAFVKQDKSRPVPVHLRNAPTRLMKELGYGHAYRYAHDEPHGYAAGETYLPEG
LEDIEWYRPVPRGLESKIQDKLAFLRQLDADAQQDPDSEKQE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=42.4036281179138, Blast_Score=320, Evalue=1e-87,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=38.0952380952381, Blast_Score=265, Evalue=5e-71,
Organism=Escherichia coli, GI1787119, Length=443, Percent_Identity=54.176072234763, Blast_Score=446, Evalue=1e-126,
Organism=Saccharomyces cerevisiae, GI6324111, Length=424, Percent_Identity=39.1509433962264, Blast_Score=295, Evalue=1e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48719; Mature: 48588

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFSVEPQKPLAEALRPQALDQVIGQQHLIGPGKPLSLAVASGKPHSMILWGPPGVGK
CCCCCCCCCCCHHHHHHCHHHHHHHHCHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCH
TTLARILAASFDAEFIPISAVFAGVKDIREAVEKAHAVLQRSGRRTILFVDEVHRFNKSQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCC
QDAFLPFVESGLITFIGATTENPSFEVNSALLSRAQVYVLNSLSEDELKQLFARARTEGA
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
LDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQARGVADIDPGFLEEVLTLNARRF
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
DKGGDAFYDQISALHKSVRGSNPDAALYWLSRMLDGGADPRYLARRIVRMAWEDIGLADP
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
RAMQIANDAALTYERLGSPEGELALGQAVIYLAVAAKSNAGYKAYNEARAFVKQDKSRPV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCC
PVHLRNAPTRLMKELGYGHAYRYAHDEPHGYAAGETYLPEGLEDIEWYRPVPRGLESKIQ
CEEECCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHH
DKLAFLRQLDADAQQDPDSEKQE
HHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDLFSVEPQKPLAEALRPQALDQVIGQQHLIGPGKPLSLAVASGKPHSMILWGPPGVGK
CCCCCCCCCCHHHHHHCHHHHHHHHCHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCH
TTLARILAASFDAEFIPISAVFAGVKDIREAVEKAHAVLQRSGRRTILFVDEVHRFNKSQ
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCC
QDAFLPFVESGLITFIGATTENPSFEVNSALLSRAQVYVLNSLSEDELKQLFARARTEGA
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
LDGLNFDDAAVSTLTGYADGDARRFLNLLEQTRTAAQARGVADIDPGFLEEVLTLNARRF
CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
DKGGDAFYDQISALHKSVRGSNPDAALYWLSRMLDGGADPRYLARRIVRMAWEDIGLADP
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
RAMQIANDAALTYERLGSPEGELALGQAVIYLAVAAKSNAGYKAYNEARAFVKQDKSRPV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCC
PVHLRNAPTRLMKELGYGHAYRYAHDEPHGYAAGETYLPEGLEDIEWYRPVPRGLESKIQ
CEEECCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHH
DKLAFLRQLDADAQQDPDSEKQE
HHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]