| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34496820
Identifier: 34496820
GI number: 34496820
Start: 1437124
End: 1438329
Strand: Reverse
Name: 34496820
Synonym: CV_1365
Alternate gene names: NA
Gene position: 1438329-1437124 (Counterclockwise)
Preceding gene: 34496821
Following gene: 34496816
Centisome position: 30.27
GC content: 63.35
Gene sequence:
>1206_bases GTGCGCGTCCCCGGCTGCGGCGGTACAATCCCGTTTTACCAGATTGAGCAAGCACCACAGGTTTCCCGCATGAAAATCAG CAGCAACTTCGACGCAGGCAGCATCGAGATCGTCTCCGCCGACAGCCTTGAAGACATCCAACTGCGCATCCGCCGCGACA ACGCGGCCGAATTCGCGCAGTGGTTCTACTTCCGCGTGCAAGGGGCTGCCTACCAACACTGCACCTTCCGCTTCCTCAAT GCGGCAGAATGCGCGTACCCGCAAGGCTGGGTCGACTACCAAGCGATGGCCTCCTACGACCGCGTCAACTGGTTCCGCGT CCCGACCCGCTACGAAGACGGCGTGATGGTGATCGAACACGTGCCGTTGTCCGGCAGCATCTACTACGCCTACTTCGAGC CGTATTCCTACGATCAGCACCTCAACCTGATCGGCCAGGCCCAGGGCTCCGGCCTGTGCCAGGTGTCCGACCTCGGCTCC ACGGTGCAAGGCCGCGACATGAACCTGCTGACCATAGGCCATGAGGTGGAGTCGGACCTGAAGATCTGGATCACCGCACG CCAGCACCCCGGCGAAACGATGGCGGAGTGGTTCATCGAGGGCCTCCTCAATCGCCTGCTGGATCCGCAAGATCCGACCA GCCGCGCGCTGCTGGACCGCGCGACCTTCTACGTGGTGCCGAACATGAATCCCGACGGCTCGGTGCTCGGCAACCTGCGC ACCAACGCGGCCGGCGCCAACCTCAATCGGGAATGGGCCAACCCCAGCGCGGAAACCAGTCCGGAAGTGCTGGTGGTGCG CCAGAAGATGCTGGAAACCGGGGTGGACCTGTTCCTGGACATCCACGGCGACGAGAACATCCCTTACGTATTCCTGGCCG GAACCGAAGGCGTGCCGTCCTGGAACGCAAGGCTGGAAAAGCTGGCCGACAGTTTCCGCCACCATTTCCTGCTGGCCAGC CCCGACTTCCAGACCGAGCACGGCTACCCGCGCAACGAACCGGGCAAGGCCAATCCCGGCATCGCCACCAACTGGGTCTG CGAACAGTTCGGCTGCCTGGCCTTCACGCTGGAGATGCCGTTCAAGGACAACCACAACCTGCCGGACGACGACTTCGGCT GGAACGGCCAACGCAGCCTGCGCCTCGGCGAATCCGCGCTTAGCCCGATCTACGCGGTGCTGAACGACCTGGCCCGCGGC GAATAA
Upstream 100 bases:
>100_bases CCGACGCGGTGAAGAACTCCGCCAAGCGCGGCGCCACCGTCTGAACGGCCCGCGCCCGTCGCCGCAACCCCGCCACGAGG CGGGGTTTTCGCATTAACGG
Downstream 100 bases:
>100_bases TCGCCTCGATCAAAAAAGCCGGCATTCGCCGGCTTTTTTCATGCCACTCGACTCACATCGCCACGGGAAGCTTGTCCAGC GTCTTGACCAGCTCCACCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 401; Mature: 401
Protein sequence:
>401_residues MRVPGCGGTIPFYQIEQAPQVSRMKISSNFDAGSIEIVSADSLEDIQLRIRRDNAAEFAQWFYFRVQGAAYQHCTFRFLN AAECAYPQGWVDYQAMASYDRVNWFRVPTRYEDGVMVIEHVPLSGSIYYAYFEPYSYDQHLNLIGQAQGSGLCQVSDLGS TVQGRDMNLLTIGHEVESDLKIWITARQHPGETMAEWFIEGLLNRLLDPQDPTSRALLDRATFYVVPNMNPDGSVLGNLR TNAAGANLNREWANPSAETSPEVLVVRQKMLETGVDLFLDIHGDENIPYVFLAGTEGVPSWNARLEKLADSFRHHFLLAS PDFQTEHGYPRNEPGKANPGIATNWVCEQFGCLAFTLEMPFKDNHNLPDDDFGWNGQRSLRLGESALSPIYAVLNDLARG E
Sequences:
>Translated_401_residues MRVPGCGGTIPFYQIEQAPQVSRMKISSNFDAGSIEIVSADSLEDIQLRIRRDNAAEFAQWFYFRVQGAAYQHCTFRFLN AAECAYPQGWVDYQAMASYDRVNWFRVPTRYEDGVMVIEHVPLSGSIYYAYFEPYSYDQHLNLIGQAQGSGLCQVSDLGS TVQGRDMNLLTIGHEVESDLKIWITARQHPGETMAEWFIEGLLNRLLDPQDPTSRALLDRATFYVVPNMNPDGSVLGNLR TNAAGANLNREWANPSAETSPEVLVVRQKMLETGVDLFLDIHGDENIPYVFLAGTEGVPSWNARLEKLADSFRHHFLLAS PDFQTEHGYPRNEPGKANPGIATNWVCEQFGCLAFTLEMPFKDNHNLPDDDFGWNGQRSLRLGESALSPIYAVLNDLARG E >Mature_401_residues MRVPGCGGTIPFYQIEQAPQVSRMKISSNFDAGSIEIVSADSLEDIQLRIRRDNAAEFAQWFYFRVQGAAYQHCTFRFLN AAECAYPQGWVDYQAMASYDRVNWFRVPTRYEDGVMVIEHVPLSGSIYYAYFEPYSYDQHLNLIGQAQGSGLCQVSDLGS TVQGRDMNLLTIGHEVESDLKIWITARQHPGETMAEWFIEGLLNRLLDPQDPTSRALLDRATFYVVPNMNPDGSVLGNLR TNAAGANLNREWANPSAETSPEVLVVRQKMLETGVDLFLDIHGDENIPYVFLAGTEGVPSWNARLEKLADSFRHHFLLAS PDFQTEHGYPRNEPGKANPGIATNWVCEQFGCLAFTLEMPFKDNHNLPDDDFGWNGQRSLRLGESALSPIYAVLNDLARG E
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31657119, Length=330, Percent_Identity=26.969696969697, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI190194403, Length=303, Percent_Identity=27.0627062706271, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI222352158, Length=308, Percent_Identity=26.6233766233766, Blast_Score=96, Evalue=5e-20, Organism=Homo sapiens, GI120444924, Length=329, Percent_Identity=26.4437689969605, Blast_Score=93, Evalue=4e-19, Organism=Homo sapiens, GI170763513, Length=336, Percent_Identity=25.297619047619, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI78482633, Length=90, Percent_Identity=35.5555555555556, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI118421091, Length=262, Percent_Identity=24.8091603053435, Blast_Score=71, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533904, Length=375, Percent_Identity=25.0666666666667, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI193202888, Length=326, Percent_Identity=26.9938650306748, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI24641847, Length=318, Percent_Identity=23.8993710691824, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI161077807, Length=318, Percent_Identity=23.8993710691824, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI28571179, Length=318, Percent_Identity=23.8993710691824, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24641845, Length=318, Percent_Identity=23.8993710691824, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24651466, Length=246, Percent_Identity=28.4552845528455, Blast_Score=72, Evalue=8e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 45088; Mature: 45088
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVPGCGGTIPFYQIEQAPQVSRMKISSNFDAGSIEIVSADSLEDIQLRIRRDNAAEFAQ CCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHH WFYFRVQGAAYQHCTFRFLNAAECAYPQGWVDYQAMASYDRVNWFRVPTRYEDGVMVIEH EEEEEECCCCCCCHHHEECCHHHHCCCCCCCCHHHHHCCCCCEEEECCCCCCCCEEEEEE VPLSGSIYYAYFEPYSYDQHLNLIGQAQGSGLCQVSDLGSTVQGRDMNLLTIGHEVESDL CCCCCEEEEEEECCCCCCCHHCEEEECCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCE KIWITARQHPGETMAEWFIEGLLNRLLDPQDPTSRALLDRATFYVVPNMNPDGSVLGNLR EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEEECCCCCCCCEEECCC TNAAGANLNREWANPSAETSPEVLVVRQKMLETGVDLFLDIHGDENIPYVFLAGTEGVPS CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCC WNARLEKLADSFRHHFLLASPDFQTEHGYPRNEPGKANPGIATNWVCEQFGCLAFTLEMP HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEECC FKDNHNLPDDDFGWNGQRSLRLGESALSPIYAVLNDLARGE CCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRVPGCGGTIPFYQIEQAPQVSRMKISSNFDAGSIEIVSADSLEDIQLRIRRDNAAEFAQ CCCCCCCCCCCCEEECCCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHH WFYFRVQGAAYQHCTFRFLNAAECAYPQGWVDYQAMASYDRVNWFRVPTRYEDGVMVIEH EEEEEECCCCCCCHHHEECCHHHHCCCCCCCCHHHHHCCCCCEEEECCCCCCCCEEEEEE VPLSGSIYYAYFEPYSYDQHLNLIGQAQGSGLCQVSDLGSTVQGRDMNLLTIGHEVESDL CCCCCEEEEEEECCCCCCCHHCEEEECCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCE KIWITARQHPGETMAEWFIEGLLNRLLDPQDPTSRALLDRATFYVVPNMNPDGSVLGNLR EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEEECCCCCCCCEEECCC TNAAGANLNREWANPSAETSPEVLVVRQKMLETGVDLFLDIHGDENIPYVFLAGTEGVPS CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCC WNARLEKLADSFRHHFLLASPDFQTEHGYPRNEPGKANPGIATNWVCEQFGCLAFTLEMP HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEECC FKDNHNLPDDDFGWNGQRSLRLGESALSPIYAVLNDLARGE CCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]