| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34496776
Identifier: 34496776
GI number: 34496776
Start: 1391246
End: 1392649
Strand: Reverse
Name: 34496776
Synonym: CV_1321
Alternate gene names: NA
Gene position: 1392649-1391246 (Counterclockwise)
Preceding gene: 34496782
Following gene: 34496771
Centisome position: 29.31
GC content: 72.01
Gene sequence:
>1404_bases ATGGCACCGGCGCCGGCCAGTACCGTTTCCGCCTGTCCGGCACCGCCCGCAGCGGCTGGAAAACCCAACCCGTCACTTTT TCCGTGGCCGGCGACCTGTCCAGCGGACGCGTGCTCAGCATCCACTGCCATGCCGGCAACGGCAACCGCCAGGCCTGCTA TCCGCCCAAGCCCCTCGCGACCCGATCCTGAACAGGCTCTCCCCCGGCGTTCAGACCGGTTTCGGCTCCAGCTCGTCTTC CAGCCTGATCTCCATCAATTGGCAGCTGCCGGTCTGCTGCAGCAAACGTTGCGCCCGGACCAGCCACTCGCCGCCGTCGG CCTGCAAGCGGAACGGCCGCAGCGCCTGGTACTGCCTTCCCGGCAGCACCAGCACGCCGCGCTGGCGGAAACGCCGCTCC GCCTGCAGCAGCAGGCCGGGGTCCAGCGGCGCGTCCGGATGGCTGGTCACGGCGGAGGCGCCGACCGCCTGCGGCCGCTT GCCGACGAACTCCACCCCGCACTCCGCCGGCGCCTCTCCGCCGGGCAGGCTGATCCAGCGCACCAGTCCAAGCTGCCATT CGAAACCGCGCCGCTTCAGCATCACCAGCGCGCCCGCCTGCAGCAAATCCGGCGGACAATCTCCATACAGCCTCATGCCC GACGGGCTGAGGTTGCCGAGCAGCAATTCGCCGGCTTCCACCCCCTCCGGCAGGCTGCCCTCCCGGGCCAGCCGCCAGCA GGCGTCGAAACCGCCGACCACGGTCACCCGCTGGCCATTGCGCTGATTGCGCCGCAGGTGGCGGCGCTGCGGGGGACGGC TCCACTCCACCTCCAGCCGGCCCAGCAACTGCCACTGCGCGGCGGAGAACTCGTCGGCCTGCGCTTTGGCGGCGCTCCGC AGGCGCCGGATCACGTCGGAGGCATCCGCCCGCCAGTAGCCGCCAGCCTCCTCAGCCGCGGCGATGGCGGCGAAGCGCCC CGGGCTGTCCGCCTCGGACGACACCAGCCAGCCCTCCACCTCGACGCCGCTTTTCGGCGGCCCCTCCAGGCGCAATGCCG GCCCATGCGCCGCGGCCCAGTCCAGCAGCCACGATTGGCGGCGCGGGTCCAGCCGGTTGCTCGACGTGATGCCCAACAGC AGCATCTGCCGGTAGCAGGCCCCAAGCGGCGGCTGGCCGTCGAGGGCGATCCTGCCCTCCCAGCCCCGCCGGCGCGCTTC GGCGAACAAGCGGTGACAGTCCTGCCAGAAGCCGGGAAACAGCGGCGCGTATCCCAAAGCGTGGCCGCGCTGCAGCCGCC AGCCGCTGCACAGCGCCAATCCCAGCGCCTGGCGCAGCAGGCCGCCGTCGCCGAAACGCCCGGCGCGGCGCGCGGCGCAG GCCTGGGCCAACAGCTTGCAGGCTTCGTGAAGCTCGCGCCATAG
Upstream 100 bases:
>100_bases GACCACTTCTGGCGCAAGCGCGAGATCGAGGAAGTCAGCCGACGCATCATAGAAAAGGAGCTGGGCTACCCGGAGACCAC CCATCTGATCGCGCAGGAGG
Downstream 100 bases:
>100_bases GCCGCGCAAGGCGCGGTCGCTCTCGATCCCGGCGCCGCGCCAGAGCAGCGGCAGACAGGCCTCGAACAACTCCTTCAGCG CGTAAAGCCGGTCAGACAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MAPAPASTVSACPAPPAAAGKPNPSLFPWPATCPADACSASTAMPATATARPAIRPSPSRPDPEQALPRRSDRFRLQLVF QPDLHQLAAAGLLQQTLRPDQPLAAVGLQAERPQRLVLPSRQHQHAALAETPLRLQQQAGVQRRVRMAGHGGGADRLRPL ADELHPALRRRLSAGQADPAHQSKLPFETAPLQHHQRARLQQIRRTISIQPHARRAEVAEQQFAGFHPLRQAALPGQPPA GVETADHGHPLAIALIAPQVAALRGTAPLHLQPAQQLPLRGGELVGLRFGGAPQAPDHVGGIRPPVAASLLSRGDGGEAP RAVRLGRHQPALHLDAAFRRPLQAQCRPMRRGPVQQPRLAARVQPVARRDAQQQHLPVAGPKRRLAVEGDPALPAPPARF GEQAVTVLPEAGKQRRVSQSVAALQPPAAAQRQSQRLAQQAAVAETPGAARGAGLGQQLAGFVKLAP
Sequences:
>Translated_467_residues MAPAPASTVSACPAPPAAAGKPNPSLFPWPATCPADACSASTAMPATATARPAIRPSPSRPDPEQALPRRSDRFRLQLVF QPDLHQLAAAGLLQQTLRPDQPLAAVGLQAERPQRLVLPSRQHQHAALAETPLRLQQQAGVQRRVRMAGHGGGADRLRPL ADELHPALRRRLSAGQADPAHQSKLPFETAPLQHHQRARLQQIRRTISIQPHARRAEVAEQQFAGFHPLRQAALPGQPPA GVETADHGHPLAIALIAPQVAALRGTAPLHLQPAQQLPLRGGELVGLRFGGAPQAPDHVGGIRPPVAASLLSRGDGGEAP RAVRLGRHQPALHLDAAFRRPLQAQCRPMRRGPVQQPRLAARVQPVARRDAQQQHLPVAGPKRRLAVEGDPALPAPPARF GEQAVTVLPEAGKQRRVSQSVAALQPPAAAQRQSQRLAQQAAVAETPGAARGAGLGQQLAGFVKLAP >Mature_466_residues APAPASTVSACPAPPAAAGKPNPSLFPWPATCPADACSASTAMPATATARPAIRPSPSRPDPEQALPRRSDRFRLQLVFQ PDLHQLAAAGLLQQTLRPDQPLAAVGLQAERPQRLVLPSRQHQHAALAETPLRLQQQAGVQRRVRMAGHGGGADRLRPLA DELHPALRRRLSAGQADPAHQSKLPFETAPLQHHQRARLQQIRRTISIQPHARRAEVAEQQFAGFHPLRQAALPGQPPAG VETADHGHPLAIALIAPQVAALRGTAPLHLQPAQQLPLRGGELVGLRFGGAPQAPDHVGGIRPPVAASLLSRGDGGEAPR AVRLGRHQPALHLDAAFRRPLQAQCRPMRRGPVQQPRLAARVQPVARRDAQQQHLPVAGPKRRLAVEGDPALPAPPARFG EQAVTVLPEAGKQRRVSQSVAALQPPAAAQRQSQRLAQQAAVAETPGAARGAGLGQQLAGFVKLAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49520; Mature: 49389
Theoretical pI: Translated: 12.27; Mature: 12.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPAPASTVSACPAPPAAAGKPNPSLFPWPATCPADACSASTAMPATATARPAIRPSPSR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC PDPEQALPRRSDRFRLQLVFQPDLHQLAAAGLLQQTLRPDQPLAAVGLQAERPQRLVLPS CCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEECCCC RQHQHAALAETPLRLQQQAGVQRRVRMAGHGGGADRLRPLADELHPALRRRLSAGQADPA CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC HQSKLPFETAPLQHHQRARLQQIRRTISIQPHARRAEVAEQQFAGFHPLRQAALPGQPPA HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCC GVETADHGHPLAIALIAPQVAALRGTAPLHLQPAQQLPLRGGELVGLRFGGAPQAPDHVG CCCCCCCCCCEEEEEECHHHHHHCCCCCCEECCHHHCCCCCCCEEEEEECCCCCCCHHCC GIRPPVAASLLSRGDGGEAPRAVRLGRHQPALHLDAAFRRPLQAQCRPMRRGPVQQPRLA CCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCEEHHHHHCCCHHHHHCHHHCCCCCCCHHH ARVQPVARRDAQQQHLPVAGPKRRLAVEGDPALPAPPARFGEQAVTVLPEAGKQRRVSQS HHHCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHCCHHEEECCCCCHHHHHHHH VAALQPPAAAQRQSQRLAQQAAVAETPGAARGAGLGQQLAGFVKLAP HHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHCCCC >Mature Secondary Structure APAPASTVSACPAPPAAAGKPNPSLFPWPATCPADACSASTAMPATATARPAIRPSPSR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC PDPEQALPRRSDRFRLQLVFQPDLHQLAAAGLLQQTLRPDQPLAAVGLQAERPQRLVLPS CCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEECCCC RQHQHAALAETPLRLQQQAGVQRRVRMAGHGGGADRLRPLADELHPALRRRLSAGQADPA CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC HQSKLPFETAPLQHHQRARLQQIRRTISIQPHARRAEVAEQQFAGFHPLRQAALPGQPPA HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCC GVETADHGHPLAIALIAPQVAALRGTAPLHLQPAQQLPLRGGELVGLRFGGAPQAPDHVG CCCCCCCCCCEEEEEECHHHHHHCCCCCCEECCHHHCCCCCCCEEEEEECCCCCCCHHCC GIRPPVAASLLSRGDGGEAPRAVRLGRHQPALHLDAAFRRPLQAQCRPMRRGPVQQPRLA CCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCEEHHHHHCCCHHHHHCHHHCCCCCCCHHH ARVQPVARRDAQQQHLPVAGPKRRLAVEGDPALPAPPARFGEQAVTVLPEAGKQRRVSQS HHHCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHCCHHEEECCCCCHHHHHHHH VAALQPPAAAQRQSQRLAQQAAVAETPGAARGAGLGQQLAGFVKLAP HHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA