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The map label for this gene is ydfH [C]

Identifier: 34496484

GI number: 34496484

Start: 1073985

End: 1074629

Strand: Reverse

Name: ydfH [C]

Synonym: CV_1029

Alternate gene names: 34496484

Gene position: 1074629-1073985 (Counterclockwise)

Preceding gene: 34496485

Following gene: 34496481

Centisome position: 22.62

GC content: 64.96

Gene sequence:

>645_bases
TTGACCGAGCAGATCGCCCAATATTTAGGCAGACAGATCATTCAGGGCGAAATGAAACCGGGCGAGCGGATCCAGGAACT
GCGCATCGCTTCCGAACTGGAAGTCAGCCGCGGTTCGGTGCGAGAGGCCTTGCTGATTCTGCAGCGCCGCCACCTGGTGG
ACATCTTCCCGCGCCGCGGCGCGATGGTGTCCAGCATCAGCGCGCGCGACGTGCGCGACTTCTTCGACCTGTGGTTCCTG
CTGCTGGACCGCGTGGCGCAGAACCTGGCCGCCGGCTGGCAGAACGACGACCTGGCCCGCTTCATCGAGCTGATGGCGCT
GCTGGAGGAAGACAACCGCCGCGACGACCTGCAGGCCTTCTACGAGCACGGCATCGAATTCCTGTCCGCGCTGTACCGCC
ACGCCGACAACCGCTACCTGACCGACACCCTGACAGACATGCTGCCGCTGACCCAGCGCTGCCTGTACGCGATCCTGCGC
GCCGGCAAGAGCCAGATGGACCGCACCCACCAGTTCCTGGAAACCCTGCTGAAAACGCTGATCGCGCGCGACACCAGCCG
CCTGAAGCAGATGATCGCCGAGTTCGGCCAGGATTACAGCCTGCTCGCGCAAAGCGCGGCCGAGGCGCTGGAAGGCGGCG
CCTGA

Upstream 100 bases:

>100_bases
AGGATACTGCCGGACAATCCGGCACAATGCCGTACAATATCAAGAGAACGAGAAAATCAATTTCCGGAGATGATTCATGA
CATTCAAGGCCAATGACCTC

Downstream 100 bases:

>100_bases
CTCCCGTTTCCCTGATAAAAAAAGGCTGCCGAGGCAGCCTTTTTCATTGGCGCGCGCCGTCAGCGGCGGCGGTATTCGAC
GAAGGCGTAGGGCAGCCCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Regulatory Protein GntR HTH; Transcriptional Regulator GntR Family; Bacterial Regulatory Protein; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTEQIAQYLGRQIIQGEMKPGERIQELRIASELEVSRGSVREALLILQRRHLVDIFPRRGAMVSSISARDVRDFFDLWFL
LLDRVAQNLAAGWQNDDLARFIELMALLEEDNRRDDLQAFYEHGIEFLSALYRHADNRYLTDTLTDMLPLTQRCLYAILR
AGKSQMDRTHQFLETLLKTLIARDTSRLKQMIAEFGQDYSLLAQSAAEALEGGA

Sequences:

>Translated_214_residues
MTEQIAQYLGRQIIQGEMKPGERIQELRIASELEVSRGSVREALLILQRRHLVDIFPRRGAMVSSISARDVRDFFDLWFL
LLDRVAQNLAAGWQNDDLARFIELMALLEEDNRRDDLQAFYEHGIEFLSALYRHADNRYLTDTLTDMLPLTQRCLYAILR
AGKSQMDRTHQFLETLLKTLIARDTSRLKQMIAEFGQDYSLLAQSAAEALEGGA
>Mature_213_residues
TEQIAQYLGRQIIQGEMKPGERIQELRIASELEVSRGSVREALLILQRRHLVDIFPRRGAMVSSISARDVRDFFDLWFLL
LDRVAQNLAAGWQNDDLARFIELMALLEEDNRRDDLQAFYEHGIEFLSALYRHADNRYLTDTLTDMLPLTQRCLYAILRA
GKSQMDRTHQFLETLLKTLIARDTSRLKQMIAEFGQDYSLLAQSAAEALEGGA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24650; Mature: 24518

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQIAQYLGRQIIQGEMKPGERIQELRIASELEVSRGSVREALLILQRRHLVDIFPRRG
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AMVSSISARDVRDFFDLWFLLLDRVAQNLAAGWQNDDLARFIELMALLEEDNRRDDLQAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
YEHGIEFLSALYRHADNRYLTDTLTDMLPLTQRCLYAILRAGKSQMDRTHQFLETLLKTL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
IARDTSRLKQMIAEFGQDYSLLAQSAAEALEGGA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TEQIAQYLGRQIIQGEMKPGERIQELRIASELEVSRGSVREALLILQRRHLVDIFPRRG
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AMVSSISARDVRDFFDLWFLLLDRVAQNLAAGWQNDDLARFIELMALLEEDNRRDDLQAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
YEHGIEFLSALYRHADNRYLTDTLTDMLPLTQRCLYAILRAGKSQMDRTHQFLETLLKTL
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
IARDTSRLKQMIAEFGQDYSLLAQSAAEALEGGA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA