| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34496438
Identifier: 34496438
GI number: 34496438
Start: 1019703
End: 1020785
Strand: Reverse
Name: 34496438
Synonym: CV_0983
Alternate gene names: NA
Gene position: 1020785-1019703 (Counterclockwise)
Preceding gene: 34496439
Following gene: 34496436
Centisome position: 21.49
GC content: 68.51
Gene sequence:
>1083_bases ATGACATACACGACACAGTGCCCCAACTGCCAGACCCGATTCAAGGTCAATGACAGCCAGTTAGCAGCCGCCGATGGACT GGTGCGCTGCGGGCGCTGTTCGCATGTGTTCAAGGCGCCGGATCATTTCGTCGTCACCCGGCCGGCGCCCGAGCCGGTCC CGGCCGCGCCGCCGGCGTTTCACGCGCCCGCCGAGCGCGACCCGATGGACGACTTCGAGCTGGAAGTGCCGGACTTTGAT CCGCAAGCCCAGCAGGCAGAGGTCCATATCCTGCCGGAGCCGGCCGCCGCGCCGCAGGCGCGCCCCGCCGCGCCGATTCA CGCCGAAGCCCCGGCCGCGCCGCAGGAAGACGTCGAGGCCTTCCAGCGCGCCCTGTCCGAGGCGATGCAGAACCGACATA TCTCCACGCCGATAGGCAACCCCTTCGACGATCCGGAGCCGGCCCCGGCGCCCGAGCCCGAAGTGTTCGGCAGCCGCCGG CGCGCCGAAGCGACGCATGCCGAGGAGGTGCGCCCCTCGCGGGCGGAACCGGAAGACGAGCCGCTGTTCACCGACGCCGA CGCGGTGGAGGAAGAGGCGGCCCGCGCCCACAAGCCGGCTGGCCCCTGGCTGAACGGCCTGCTGGCCGCGCTGGCGGCGA TCGGCGTGCTGTTCCTCGCCGCCCAGCTGGTCTACATCAACCGCACGCGCATCGCGGCGGAAGTGCCGGAATCCCGGCCG ACGCTGGAGAGCCTGTGCCGGGCGCTGGACTGCGAGGTGCCGTGGCCGACCGACATCGCGCGCATCCGCACCGAATGGTC GGAGCTCGCCTTCGTGCCCGACTACCCCAACCTGATCCAGCTGTCGGCGACGCTGAAGAACCACGCGCAATACCCCCAGG CCTATCCGATGCTGGAAGTCACGCTGAAGGACAGCGACGACCAGGTGCTGATCCGCAAGGTGTTCGCGCCCAAGGAATAC CTGAAGCCGGACGACCTCAAGCTGGGGCGCTTCAATGGCAACAGCGAAGTCAAAGTCACCATGCGGCTGGATGCCGGCAA GGTGCATGCGATGGGCTACAGCTTGTACTGGTTCTACCCCTGA
Upstream 100 bases:
>100_bases CCGACGAACTGTCCGCCATCTACAGCCAATGGTTCGAGATGGACCCGCCGGTGTTCGACGAAGGATGGACTAGACTGACA GGAACCCGACGCGCCGCCGT
Downstream 100 bases:
>100_bases ATGCACTGAAGACGGCGGCGTCGACCGCTATCAGCCCTCATGGCTTCAATTGGAAACTGAAGGTCTCAAGCAAGGTCGTA TCGGGCGCGCACTGATACTG
Product: transmembrane protein
Products: NA
Alternate protein names: Zinc Finger/Thioredoxin; Zinc Finger-Domain-Containing Protein
Number of amino acids: Translated: 360; Mature: 359
Protein sequence:
>360_residues MTYTTQCPNCQTRFKVNDSQLAAADGLVRCGRCSHVFKAPDHFVVTRPAPEPVPAAPPAFHAPAERDPMDDFELEVPDFD PQAQQAEVHILPEPAAAPQARPAAPIHAEAPAAPQEDVEAFQRALSEAMQNRHISTPIGNPFDDPEPAPAPEPEVFGSRR RAEATHAEEVRPSRAEPEDEPLFTDADAVEEEAARAHKPAGPWLNGLLAALAAIGVLFLAAQLVYINRTRIAAEVPESRP TLESLCRALDCEVPWPTDIARIRTEWSELAFVPDYPNLIQLSATLKNHAQYPQAYPMLEVTLKDSDDQVLIRKVFAPKEY LKPDDLKLGRFNGNSEVKVTMRLDAGKVHAMGYSLYWFYP
Sequences:
>Translated_360_residues MTYTTQCPNCQTRFKVNDSQLAAADGLVRCGRCSHVFKAPDHFVVTRPAPEPVPAAPPAFHAPAERDPMDDFELEVPDFD PQAQQAEVHILPEPAAAPQARPAAPIHAEAPAAPQEDVEAFQRALSEAMQNRHISTPIGNPFDDPEPAPAPEPEVFGSRR RAEATHAEEVRPSRAEPEDEPLFTDADAVEEEAARAHKPAGPWLNGLLAALAAIGVLFLAAQLVYINRTRIAAEVPESRP TLESLCRALDCEVPWPTDIARIRTEWSELAFVPDYPNLIQLSATLKNHAQYPQAYPMLEVTLKDSDDQVLIRKVFAPKEY LKPDDLKLGRFNGNSEVKVTMRLDAGKVHAMGYSLYWFYP >Mature_359_residues TYTTQCPNCQTRFKVNDSQLAAADGLVRCGRCSHVFKAPDHFVVTRPAPEPVPAAPPAFHAPAERDPMDDFELEVPDFDP QAQQAEVHILPEPAAAPQARPAAPIHAEAPAAPQEDVEAFQRALSEAMQNRHISTPIGNPFDDPEPAPAPEPEVFGSRRR AEATHAEEVRPSRAEPEDEPLFTDADAVEEEAARAHKPAGPWLNGLLAALAAIGVLFLAAQLVYINRTRIAAEVPESRPT LESLCRALDCEVPWPTDIARIRTEWSELAFVPDYPNLIQLSATLKNHAQYPQAYPMLEVTLKDSDDQVLIRKVFAPKEYL KPDDLKLGRFNGNSEVKVTMRLDAGKVHAMGYSLYWFYP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39818; Mature: 39687
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYTTQCPNCQTRFKVNDSQLAAADGLVRCGRCSHVFKAPDHFVVTRPAPEPVPAAPPAF CCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCCCCCC HAPAERDPMDDFELEVPDFDPQAQQAEVHILPEPAAAPQARPAAPIHAEAPAAPQEDVEA CCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH FQRALSEAMQNRHISTPIGNPFDDPEPAPAPEPEVFGSRRRAEATHAEEVRPSRAEPEDE HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCC PLFTDADAVEEEAARAHKPAGPWLNGLLAALAAIGVLFLAAQLVYINRTRIAAEVPESRP CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCC TLESLCRALDCEVPWPTDIARIRTEWSELAFVPDYPNLIQLSATLKNHAQYPQAYPMLEV HHHHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCEEHHHHHHHHHCCCCCCCEEEE TLKDSDDQVLIRKVFAPKEYLKPDDLKLGRFNGNSEVKVTMRLDAGKVHAMGYSLYWFYP EEECCCCHHHHHHHHCCHHHCCCCCCEEEEECCCCEEEEEEEECCCEEEEEEEEEEEECC >Mature Secondary Structure TYTTQCPNCQTRFKVNDSQLAAADGLVRCGRCSHVFKAPDHFVVTRPAPEPVPAAPPAF CCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCCCCCC HAPAERDPMDDFELEVPDFDPQAQQAEVHILPEPAAAPQARPAAPIHAEAPAAPQEDVEA CCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHH FQRALSEAMQNRHISTPIGNPFDDPEPAPAPEPEVFGSRRRAEATHAEEVRPSRAEPEDE HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCC PLFTDADAVEEEAARAHKPAGPWLNGLLAALAAIGVLFLAAQLVYINRTRIAAEVPESRP CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCC TLESLCRALDCEVPWPTDIARIRTEWSELAFVPDYPNLIQLSATLKNHAQYPQAYPMLEV HHHHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCEEHHHHHHHHHCCCCCCCEEEE TLKDSDDQVLIRKVFAPKEYLKPDDLKLGRFNGNSEVKVTMRLDAGKVHAMGYSLYWFYP EEECCCCHHHHHHHHCCHHHCCCCCCEEEEECCCCEEEEEEEECCCEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA