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The map label for this gene is arnD [H]

Identifier: 34496200

GI number: 34496200

Start: 764882

End: 765781

Strand: Reverse

Name: arnD [H]

Synonym: CV_0745

Alternate gene names: 34496200

Gene position: 765781-764882 (Counterclockwise)

Preceding gene: 34496202

Following gene: 34496198

Centisome position: 16.12

GC content: 68.56

Gene sequence:

>900_bases
ATGAAAAAACTTGCCTTGAAGATAGACGTCGACACCTGGCGCGGCACCCGCGAAGGCGTGCCGCGGCTGATGGAGGCGCT
GCGGCGGCACGACGCCGGTGCCACCTTCCTGTTCAGCCTGGGCCCGGACCATACCGGCCGCGCGATCAAGCGCGTGTTCC
GTCCCGGCTTCCTGTCCAAGGTGTCGCGCACTTCAGTCGTCGAGCACTACGGCATCCGCACCCTGCTGTACGGCACCGTG
CTGCCGGGACCGGACATCGGCCGCCGCGAGGCCGATCTGCTGCGCTCGGTCCGCGACGCCGGTTTCGAGGTGGGCATTCA
TTGCTGGGACCACATCAAGTGGCAGGATTACGTCGCCGGCAAGGACGCGGCCTGGACCCGCGCCGAAATGCACAAGGCGG
CCAGGCGCTTCCGCGAGATTTTCGGCGAGGATGCCCGCACCCACGGCGCCGCCGGCTGGCAGATCAACGACGCCGCGCTG
GCCTACCAGAAAGAGCTCGGCATGCTGTACGCCTCGGATGGCCGCGGCAGCCACCCGTTCCAGCCGCTGGACGCCGCAGG
CCGGCCGTTGGGCGTGCCGCAGCTGCCCACCACCCTGCCGACGCTGGACGAATTGATCGGCCTGGACGGCCTGACCAACG
ACAACGTCCACGAGCGCCTGCTGCAGCTGACCGAGAGCGAAACCGCCACCGGCCACGTCTACACGCTGCATGCGGAACTG
GAAGGCATGCGGCTGATGGAGGTGTTCGAGCGCCTGCTCGCCGGATGGAAGCGGCAGGGCTACCAGCTGGTCAGCTGCAT
CGACCTGTTCGACAGCCAGGACCTCGCCAACCTGCCCTCCGGCCGGGTGACGATGGGCGAGATCCCGGGCCGCAGCGGCA
CGCTGGCGCTGCAGGCCTGA

Upstream 100 bases:

>100_bases
TATCGCCGCCGTACTGGCGGCGGCGGCCGGAAAACCGCACGACAAGCCTCTGTCGCGGTAAACTCGCCAGCGATTCCGAA
CACTTGAAGCCATCAGAACA

Downstream 100 bases:

>100_bases
GCCGTATCGGCTTCTCAATAAAAAAACCCGCCGAAAACGGCGGGTTTTTCTTTTACCGGGCCCACGCGTCGATCAGAGCG
CGGCCTTCGGCGAGGCGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKKLALKIDVDTWRGTREGVPRLMEALRRHDAGATFLFSLGPDHTGRAIKRVFRPGFLSKVSRTSVVEHYGIRTLLYGTV
LPGPDIGRREADLLRSVRDAGFEVGIHCWDHIKWQDYVAGKDAAWTRAEMHKAARRFREIFGEDARTHGAAGWQINDAAL
AYQKELGMLYASDGRGSHPFQPLDAAGRPLGVPQLPTTLPTLDELIGLDGLTNDNVHERLLQLTESETATGHVYTLHAEL
EGMRLMEVFERLLAGWKRQGYQLVSCIDLFDSQDLANLPSGRVTMGEIPGRSGTLALQA

Sequences:

>Translated_299_residues
MKKLALKIDVDTWRGTREGVPRLMEALRRHDAGATFLFSLGPDHTGRAIKRVFRPGFLSKVSRTSVVEHYGIRTLLYGTV
LPGPDIGRREADLLRSVRDAGFEVGIHCWDHIKWQDYVAGKDAAWTRAEMHKAARRFREIFGEDARTHGAAGWQINDAAL
AYQKELGMLYASDGRGSHPFQPLDAAGRPLGVPQLPTTLPTLDELIGLDGLTNDNVHERLLQLTESETATGHVYTLHAEL
EGMRLMEVFERLLAGWKRQGYQLVSCIDLFDSQDLANLPSGRVTMGEIPGRSGTLALQA
>Mature_299_residues
MKKLALKIDVDTWRGTREGVPRLMEALRRHDAGATFLFSLGPDHTGRAIKRVFRPGFLSKVSRTSVVEHYGIRTLLYGTV
LPGPDIGRREADLLRSVRDAGFEVGIHCWDHIKWQDYVAGKDAAWTRAEMHKAARRFREIFGEDARTHGAAGWQINDAAL
AYQKELGMLYASDGRGSHPFQPLDAAGRPLGVPQLPTTLPTLDELIGLDGLTNDNVHERLLQLTESETATGHVYTLHAEL
EGMRLMEVFERLLAGWKRQGYQLVSCIDLFDSQDLANLPSGRVTMGEIPGRSGTLALQA

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=298, Percent_Identity=38.9261744966443, Blast_Score=197, Evalue=8e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33250; Mature: 33250

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLALKIDVDTWRGTREGVPRLMEALRRHDAGATFLFSLGPDHTGRAIKRVFRPGFLSK
CCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCHHHHH
VSRTSVVEHYGIRTLLYGTVLPGPDIGRREADLLRSVRDAGFEVGIHCWDHIKWQDYVAG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCCHHHHCCC
KDAAWTRAEMHKAARRFREIFGEDARTHGAAGWQINDAALAYQKELGMLYASDGRGSHPF
CCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEECHHHHHHHHHCCEEEECCCCCCCCC
QPLDAAGRPLGVPQLPTTLPTLDELIGLDGLTNDNVHERLLQLTESETATGHVYTLHAEL
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCC
EGMRLMEVFERLLAGWKRQGYQLVSCIDLFDSQDLANLPSGRVTMGEIPGRSGTLALQA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHCCCCCCEEECCCCCCCCCEEEEC
>Mature Secondary Structure
MKKLALKIDVDTWRGTREGVPRLMEALRRHDAGATFLFSLGPDHTGRAIKRVFRPGFLSK
CCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCHHHHH
VSRTSVVEHYGIRTLLYGTVLPGPDIGRREADLLRSVRDAGFEVGIHCWDHIKWQDYVAG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEHHCCCCHHHHCCC
KDAAWTRAEMHKAARRFREIFGEDARTHGAAGWQINDAALAYQKELGMLYASDGRGSHPF
CCCHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEECHHHHHHHHHCCEEEECCCCCCCCC
QPLDAAGRPLGVPQLPTTLPTLDELIGLDGLTNDNVHERLLQLTESETATGHVYTLHAEL
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCC
EGMRLMEVFERLLAGWKRQGYQLVSCIDLFDSQDLANLPSGRVTMGEIPGRSGTLALQA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHCCCCCCEEECCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA