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The map label for this gene is yhjC [H]

Identifier: 34496171

GI number: 34496171

Start: 742820

End: 743761

Strand: Reverse

Name: yhjC [H]

Synonym: CV_0716

Alternate gene names: 34496171

Gene position: 743761-742820 (Counterclockwise)

Preceding gene: 34496172

Following gene: 34496169

Centisome position: 15.65

GC content: 70.06

Gene sequence:

>942_bases
ATGCCGTCGCCGGACAACTTGCTGGCCTTCGATGCGCTGGCGCGCGCCGGCAGCTTCACCGCCGCCGCGGATCTGCTGGA
TTGCCACAAGAGCCTGGTCAGCGCGCGGGTCAAGGAGCTGGAGCGGGAGATGGGCGCGGCGCTGGTGCTGCGCACCACGC
GCAGGGTGGCGCTGACCGAGGCCGGCGAGCGGCTGCGCCCCCACGCCGCCAGACTGCGCGAGACGCTGTCCCAGGCGCGG
ATGGCGGTGGACGAAACGCAAAGCGACATCGAAGGCCCGCTGACGGTCAGCACCACCTCGTCGCTGGCCCAGCACGTGCT
GGGGCCGGCGCTGAGCGAGCTCGCCGCCTTGCATCCCGGCCTGCAGCTGTCGCTGGAAGTGAACAACCGGCTGCAGGACC
CGGTGGCCGACGTGCTGGACTTCTGCCTGCGCTCGGCCCGCTCCCACACCGTGCATGACGACAGGCTGGTGGCGCGGCTG
GCCGGCTACGCCAGCGAGAACCTGTACGCGTCTCCGGCCTATCTGGCCCGCCACCCGGCCATCCGCCAGCCCGCCGACCT
GGCCGCGCATCGGCTGCTGGTGATGGAATCGGAGCAACGCGGCGGACTCAAGCTCGCGCGCGGCGAACAGCTGCTGTCCC
AGCCGGTCGGCGCGCTGTTCTATCTGAACGACTACCCGCTGCGGACCCACCTGGCGCTGGCCGGGCACGGCATCACGATG
CTGGCCGATTACGCGGTGCAAAGCCATCTGCGCGACGGCGAGCTGGCGCGGGTGCTGCCGGAATGGCATTGCGACTACTG
GCCGATCTATCTGGTCCACCCCTTCCGCGCGCCGCTGACGCGCAAGTACCAGACCTTCATCGATTTCGTGCTGCCGCGCG
TCGCCGCCGCGCTGCCGGAAAACCAAATGGATCAGACTGGCCGCGCCAACAGCACCCGGTAA

Upstream 100 bases:

>100_bases
CTCGCATGGGATGGCAGATGGGTGATGCGTGCTAGGATAGTCGCCTGATTGTTCCGAAATAAATCCGCAAAATCGGATTG
ATTGTCCTGATATGAAAACA

Downstream 100 bases:

>100_bases
AACTCGACAAAGGCGCGCGCCGCCGCCGGCGCGTGGCGGCCGGGCGGGAACACCGCGTAGACGCCGCCCTTGGGCAAGGT
CCATTGCGGCAGCAGGTGGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MPSPDNLLAFDALARAGSFTAAADLLDCHKSLVSARVKELEREMGAALVLRTTRRVALTEAGERLRPHAARLRETLSQAR
MAVDETQSDIEGPLTVSTTSSLAQHVLGPALSELAALHPGLQLSLEVNNRLQDPVADVLDFCLRSARSHTVHDDRLVARL
AGYASENLYASPAYLARHPAIRQPADLAAHRLLVMESEQRGGLKLARGEQLLSQPVGALFYLNDYPLRTHLALAGHGITM
LADYAVQSHLRDGELARVLPEWHCDYWPIYLVHPFRAPLTRKYQTFIDFVLPRVAAALPENQMDQTGRANSTR

Sequences:

>Translated_313_residues
MPSPDNLLAFDALARAGSFTAAADLLDCHKSLVSARVKELEREMGAALVLRTTRRVALTEAGERLRPHAARLRETLSQAR
MAVDETQSDIEGPLTVSTTSSLAQHVLGPALSELAALHPGLQLSLEVNNRLQDPVADVLDFCLRSARSHTVHDDRLVARL
AGYASENLYASPAYLARHPAIRQPADLAAHRLLVMESEQRGGLKLARGEQLLSQPVGALFYLNDYPLRTHLALAGHGITM
LADYAVQSHLRDGELARVLPEWHCDYWPIYLVHPFRAPLTRKYQTFIDFVLPRVAAALPENQMDQTGRANSTR
>Mature_312_residues
PSPDNLLAFDALARAGSFTAAADLLDCHKSLVSARVKELEREMGAALVLRTTRRVALTEAGERLRPHAARLRETLSQARM
AVDETQSDIEGPLTVSTTSSLAQHVLGPALSELAALHPGLQLSLEVNNRLQDPVADVLDFCLRSARSHTVHDDRLVARLA
GYASENLYASPAYLARHPAIRQPADLAAHRLLVMESEQRGGLKLARGEQLLSQPVGALFYLNDYPLRTHLALAGHGITML
ADYAVQSHLRDGELARVLPEWHCDYWPIYLVHPFRAPLTRKYQTFIDFVLPRVAAALPENQMDQTGRANSTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=30.5263157894737, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789440, Length=301, Percent_Identity=28.9036544850498, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87081978, Length=278, Percent_Identity=29.4964028776978, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=27.1523178807947, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1789639, Length=282, Percent_Identity=28.0141843971631, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=26.9230769230769, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=27.3356401384083, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789173, Length=307, Percent_Identity=29.3159609120521, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI157672245, Length=130, Percent_Identity=30, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=136, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788706, Length=121, Percent_Identity=33.8842975206612, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34540; Mature: 34409

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPDNLLAFDALARAGSFTAAADLLDCHKSLVSARVKELEREMGAALVLRTTRRVALTE
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERLRPHAARLRETLSQARMAVDETQSDIEGPLTVSTTSSLAQHVLGPALSELAALHPG
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCC
LQLSLEVNNRLQDPVADVLDFCLRSARSHTVHDDRLVARLAGYASENLYASPAYLARHPA
CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCC
IRQPADLAAHRLLVMESEQRGGLKLARGEQLLSQPVGALFYLNDYPLRTHLALAGHGITM
CCCCHHHHHHHHHEEECCCCCCEEEHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCHHH
LADYAVQSHLRDGELARVLPEWHCDYWPIYLVHPFRAPLTRKYQTFIDFVLPRVAAALPE
HHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
NQMDQTGRANSTR
CHHHCCCCCCCCC
>Mature Secondary Structure 
PSPDNLLAFDALARAGSFTAAADLLDCHKSLVSARVKELEREMGAALVLRTTRRVALTE
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERLRPHAARLRETLSQARMAVDETQSDIEGPLTVSTTSSLAQHVLGPALSELAALHPG
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCC
LQLSLEVNNRLQDPVADVLDFCLRSARSHTVHDDRLVARLAGYASENLYASPAYLARHPA
CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCC
IRQPADLAAHRLLVMESEQRGGLKLARGEQLLSQPVGALFYLNDYPLRTHLALAGHGITM
CCCCHHHHHHHHHEEECCCCCCEEEHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCHHH
LADYAVQSHLRDGELARVLPEWHCDYWPIYLVHPFRAPLTRKYQTFIDFVLPRVAAALPE
HHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
NQMDQTGRANSTR
CHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]