| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34496149
Identifier: 34496149
GI number: 34496149
Start: 720027
End: 721226
Strand: Reverse
Name: 34496149
Synonym: CV_0694
Alternate gene names: NA
Gene position: 721226-720027 (Counterclockwise)
Preceding gene: 34496150
Following gene: 34496147
Centisome position: 15.18
GC content: 69.92
Gene sequence:
>1200_bases ATGGCGCAGGACAAGCTCGATCCGGCCTGTCATGCCGACGCCGGCCTCCACGGCAGCCCGGCGCTGCCGAAAGGGCACCG CTACCAGGTGGTGGCGCTGGTGCTGCAGGGCGGCGGCGCGCTCGGCGCCTACCAGGCCGGCGTCTACCAGGGCCTGGCGG AAGCCAAGCTGCATCCCAACTGGGTGGCGGGCATTTCCATCGGCGCGCTGAACGCCGCCATCATCGCCGGCAATCCGCCG GACAAGCGCGCCGAGCGGCTGGAGCAGTTCTGGCACACCATCAGCCGCCAGCCGCTGCTGCCGCCGACCCTGCACAATCT GCTGGACGACGCCCAGGCGCTGCCGCCGCCGCTGCAAGGCTGGCTGAACGGCCTGGAAGCCTGGCGCGCGCTGACCGAGG GCCAGAACGGCTTTTTCCTGCCGCGCCCGCCGCTGCCGCCGCATGGCGGCGGCACCGCCAGCTTCTACGACACCTCGCCG CTGAAGGACACGCTGGAGCGGCTGGCCGACTTCGACCGCATCAACGACAGCGGCGAGATGCGGGTCTCGGTGGGCGCGGT GGGCGTGGAAAGCGGCAACTTCCGCTATTTCGACAACACCCGGCAGCGGCTGCGCGCCGAGCACTTCATGGCGTCCGGGG CGCTTCCGCCCGGCTTTCCGGCGGTGGAGATTGACGGCGAGCACTACTGGGACGGCGGCATGGTGTCCAATACGCCGCTG CAGACGGTGCTGAGCGAGCGGCCGCGCCAGCACTCGCTGGTGTTCCAGGTGGACCTGTGGAGCGCGCGCGGCGAGCTGCC GTCCGACCTGTCGCGCGTCGCGCTCAGGCAGAAGGACATCCAGTACTCCAGCCGCACGCGGATGATCACCGACTACATGC GCGAAAGCCAGCAATTCCGCCAGTTGCTGCGCGAGGTGATGGAGCTGGTGCCGGAAGCCGCGCGCGACAGCCCGGCCTAT CGACGCGCCGCCGTCCAGGCCTGCGACCGCCTGTTCAACGTGGTCCACCTGATCTACCAGGACAAGCCCTGCGAAGGCCA CTACAAGGACTACCAGTTCGGCGCCCGTACCATGCGCGAGCACTGGGCAAGCGGCCTGGCCGACATCCGCGCCACTCTCG CCCATCCAGAATGGCTGGCCATGCCGACGCCTGACCGCCCCTTCGTCACCCACGACGTGCACAGCCGCGCTCCGCGCTGA
Upstream 100 bases:
>100_bases CGCCCAGACCGCGCTGTTCCTGGCCGCCTTCCCCAGCGCGGCCCTCACCGGCCAATCCTTCGTCGTCAGCCACGGCTGGT TCATGCAATAAGGAGCGTCC
Downstream 100 bases:
>100_bases GGCGGGATTTTCACCTTGGCGCTCGGCCAGGTCCCGTCCACGCTACACCAGCGTTGACGGGTCCAGGCCCGACCGGCCGG AGCAGCCGTGCGCGTCCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Patatin-Like Phospholipase; FAD-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase; Transmembrane Protein; Esterase; Serine Protease; Transmembrane Patatin-Like Phospholipase; Patatin-Like Phospholipase Domain-Containing Protein; Phospholipase Patatin Family; Alpha/Beta Hydrolase; Patatin-Like Phospholipase Family; Phospholipase Patatin Family Protein; Transpatatin- Like Phospholipase Domain-Containing Protein; Alpha-Beta Hydrolase Family Esterase; Patatin Family Phospholipase; Dehydrogenase/Reductase
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MAQDKLDPACHADAGLHGSPALPKGHRYQVVALVLQGGGALGAYQAGVYQGLAEAKLHPNWVAGISIGALNAAIIAGNPP DKRAERLEQFWHTISRQPLLPPTLHNLLDDAQALPPPLQGWLNGLEAWRALTEGQNGFFLPRPPLPPHGGGTASFYDTSP LKDTLERLADFDRINDSGEMRVSVGAVGVESGNFRYFDNTRQRLRAEHFMASGALPPGFPAVEIDGEHYWDGGMVSNTPL QTVLSERPRQHSLVFQVDLWSARGELPSDLSRVALRQKDIQYSSRTRMITDYMRESQQFRQLLREVMELVPEAARDSPAY RRAAVQACDRLFNVVHLIYQDKPCEGHYKDYQFGARTMREHWASGLADIRATLAHPEWLAMPTPDRPFVTHDVHSRAPR
Sequences:
>Translated_399_residues MAQDKLDPACHADAGLHGSPALPKGHRYQVVALVLQGGGALGAYQAGVYQGLAEAKLHPNWVAGISIGALNAAIIAGNPP DKRAERLEQFWHTISRQPLLPPTLHNLLDDAQALPPPLQGWLNGLEAWRALTEGQNGFFLPRPPLPPHGGGTASFYDTSP LKDTLERLADFDRINDSGEMRVSVGAVGVESGNFRYFDNTRQRLRAEHFMASGALPPGFPAVEIDGEHYWDGGMVSNTPL QTVLSERPRQHSLVFQVDLWSARGELPSDLSRVALRQKDIQYSSRTRMITDYMRESQQFRQLLREVMELVPEAARDSPAY RRAAVQACDRLFNVVHLIYQDKPCEGHYKDYQFGARTMREHWASGLADIRATLAHPEWLAMPTPDRPFVTHDVHSRAPR >Mature_398_residues AQDKLDPACHADAGLHGSPALPKGHRYQVVALVLQGGGALGAYQAGVYQGLAEAKLHPNWVAGISIGALNAAIIAGNPPD KRAERLEQFWHTISRQPLLPPTLHNLLDDAQALPPPLQGWLNGLEAWRALTEGQNGFFLPRPPLPPHGGGTASFYDTSPL KDTLERLADFDRINDSGEMRVSVGAVGVESGNFRYFDNTRQRLRAEHFMASGALPPGFPAVEIDGEHYWDGGMVSNTPLQ TVLSERPRQHSLVFQVDLWSARGELPSDLSRVALRQKDIQYSSRTRMITDYMRESQQFRQLLREVMELVPEAARDSPAYR RAAVQACDRLFNVVHLIYQDKPCEGHYKDYQFGARTMREHWASGLADIRATLAHPEWLAMPTPDRPFVTHDVHSRAPR
Specific function: Unknown
COG id: COG1752
COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44438; Mature: 44306
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQDKLDPACHADAGLHGSPALPKGHRYQVVALVLQGGGALGAYQAGVYQGLAEAKLHPN CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC WVAGISIGALNAAIIAGNPPDKRAERLEQFWHTISRQPLLPPTLHNLLDDAQALPPPLQG EEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHH WLNGLEAWRALTEGQNGFFLPRPPLPPHGGGTASFYDTSPLKDTLERLADFDRINDSGEM HHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCE RVSVGAVGVESGNFRYFDNTRQRLRAEHFMASGALPPGFPAVEIDGEHYWDGGMVSNTPL EEEEEEEEECCCCEEECHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEECCCCCCCCHH QTVLSERPRQHSLVFQVDLWSARGELPSDLSRVALRQKDIQYSSRTRMITDYMRESQQFR HHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH QLLREVMELVPEAARDSPAYRRAAVQACDRLFNVVHLIYQDKPCEGHYKDYQFGARTMRE HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH HWASGLADIRATLAHPEWLAMPTPDRPFVTHDVHSRAPR HHHHHHHHHHHHHCCCCEEECCCCCCCCEECCHHHCCCC >Mature Secondary Structure AQDKLDPACHADAGLHGSPALPKGHRYQVVALVLQGGGALGAYQAGVYQGLAEAKLHPN CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC WVAGISIGALNAAIIAGNPPDKRAERLEQFWHTISRQPLLPPTLHNLLDDAQALPPPLQG EEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHH WLNGLEAWRALTEGQNGFFLPRPPLPPHGGGTASFYDTSPLKDTLERLADFDRINDSGEM HHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCE RVSVGAVGVESGNFRYFDNTRQRLRAEHFMASGALPPGFPAVEIDGEHYWDGGMVSNTPL EEEEEEEEECCCCEEECHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEECCCCCCCCHH QTVLSERPRQHSLVFQVDLWSARGELPSDLSRVALRQKDIQYSSRTRMITDYMRESQQFR HHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH QLLREVMELVPEAARDSPAYRRAAVQACDRLFNVVHLIYQDKPCEGHYKDYQFGARTMRE HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH HWASGLADIRATLAHPEWLAMPTPDRPFVTHDVHSRAPR HHHHHHHHHHHHHCCCCEEECCCCCCCCEECCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA