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The map label for this gene is yjjV [H]

Identifier: 34496083

GI number: 34496083

Start: 658590

End: 659378

Strand: Reverse

Name: yjjV [H]

Synonym: CV_0628

Alternate gene names: 34496083

Gene position: 659378-658590 (Counterclockwise)

Preceding gene: 34496084

Following gene: 34496052

Centisome position: 13.88

GC content: 70.72

Gene sequence:

>789_bases
ATGCGCTTCGATCCGCTGCCGGCCGCAGACTGCCTGATAGACAGCCACTGCCATCTGGACGCGCCGGAACTGGCGCCGGA
CGTTGACGGCGTGGTGGCGCGCGCCCGGGCGGCCGGCGTCGGCCAGCTGCTGGTGCCCGCGGTGACGGCCGGCGCCTTCG
CCGACGTGCTGGCGATGCGGGAGCGCTACGGCTGCTGGATCGCCTTCGGCCTGCACCCGATCTACCTGGACCGGCACCTG
GACGAGCACCTCGACCTGCTGGACGCGGCGCTGGCCGCGCACGCGCCGGTCGCCGTCGGCGAAATCGGCCTGGATTTCTA
CCTGCCTGCCCTCGATCCCGCCCGGCAGGAAGCGCTGCTGGTCGAGCAACTGAAGCTGGCGCGCAAGCACGGCCTGCCGG
TGGTGCTGCACGTGCGCCGCTCGGTGGACCGGGTGCTGAAATACCTGCGCGAGCAGAGGATCGAATGCGGCATCGCCCAC
GCCTTCAACGGCAGCGAGCAGCAGGCGCAGGCCTTCATCCGCCAGGGCTTCAAGTTGGGCTTCGGCGGCGCGATGACCTA
CAGCGGCTCGCGCCGCATCCGCGCGCTGGCGGCGACCCTGCCGCTCTCCAGCCTGGTATTGGAAACCGACGCGCCGGACA
TCCGGCCGGAATACGCGCAGGACGTGCCCAACGAACCCTTCCAGCTGGCGCGTTTCATCGAGGTATGGGCCGGATTGCGC
GGCATGCAGGTGGCGCCGCTGCGGCGCGCGCTGCGCGACAACACCTTGGCGGCGCTGGCCTTGAACTGA

Upstream 100 bases:

>100_bases
GGACGCTGGACCTGGGCGCCGGCAGCCGCTGGGCGGCGGAAAACACCGGCGAGCACACCGCCGGCTGGCAGACGCTGCTG
GGCTTCACCTGGAAGCTGTG

Downstream 100 bases:

>100_bases
GTGTCCGGCCGACAAAAAGCCCCGGACCAGCCGGGGCTTTGTTGTGCGCCAAAATGAGGCCGCTCAGGTGCGGAAACGCT
GCAGGCAGGCGTCCAGCTCC

Product: deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRFDPLPAADCLIDSHCHLDAPELAPDVDGVVARARAAGVGQLLVPAVTAGAFADVLAMRERYGCWIAFGLHPIYLDRHL
DEHLDLLDAALAAHAPVAVGEIGLDFYLPALDPARQEALLVEQLKLARKHGLPVVLHVRRSVDRVLKYLREQRIECGIAH
AFNGSEQQAQAFIRQGFKLGFGGAMTYSGSRRIRALAATLPLSSLVLETDAPDIRPEYAQDVPNEPFQLARFIEVWAGLR
GMQVAPLRRALRDNTLAALALN

Sequences:

>Translated_262_residues
MRFDPLPAADCLIDSHCHLDAPELAPDVDGVVARARAAGVGQLLVPAVTAGAFADVLAMRERYGCWIAFGLHPIYLDRHL
DEHLDLLDAALAAHAPVAVGEIGLDFYLPALDPARQEALLVEQLKLARKHGLPVVLHVRRSVDRVLKYLREQRIECGIAH
AFNGSEQQAQAFIRQGFKLGFGGAMTYSGSRRIRALAATLPLSSLVLETDAPDIRPEYAQDVPNEPFQLARFIEVWAGLR
GMQVAPLRRALRDNTLAALALN
>Mature_262_residues
MRFDPLPAADCLIDSHCHLDAPELAPDVDGVVARARAAGVGQLLVPAVTAGAFADVLAMRERYGCWIAFGLHPIYLDRHL
DEHLDLLDAALAAHAPVAVGEIGLDFYLPALDPARQEALLVEQLKLARKHGLPVVLHVRRSVDRVLKYLREQRIECGIAH
AFNGSEQQAQAFIRQGFKLGFGGAMTYSGSRRIRALAATLPLSSLVLETDAPDIRPEYAQDVPNEPFQLARFIEVWAGLR
GMQVAPLRRALRDNTLAALALN

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=259, Percent_Identity=31.6602316602317, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI110349734, Length=259, Percent_Identity=31.6602316602317, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI226061853, Length=265, Percent_Identity=31.3207547169811, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI226061614, Length=251, Percent_Identity=29.8804780876494, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=31.7391304347826, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI14042943, Length=267, Percent_Identity=25.0936329588015, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI225903424, Length=224, Percent_Identity=26.7857142857143, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI87082439, Length=248, Percent_Identity=43.9516129032258, Blast_Score=187, Evalue=8e-49,
Organism=Escherichia coli, GI1787342, Length=252, Percent_Identity=31.7460317460317, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI48994985, Length=246, Percent_Identity=29.2682926829268, Blast_Score=90, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71980746, Length=260, Percent_Identity=25.7692307692308, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17559024, Length=222, Percent_Identity=27.027027027027, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648690, Length=215, Percent_Identity=28.3720930232558, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.1

Molecular weight: Translated: 28659; Mature: 28659

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDPLPAADCLIDSHCHLDAPELAPDVDGVVARARAAGVGQLLVPAVTAGAFADVLAMR
CCCCCCCHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ERYGCWIAFGLHPIYLDRHLDEHLDLLDAALAAHAPVAVGEIGLDFYLPALDPARQEALL
HHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHEECCCCCHHHHHHHH
VEQLKLARKHGLPVVLHVRRSVDRVLKYLREQRIECGIAHAFNGSEQQAQAFIRQGFKLG
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHCCCEEC
FGGAMTYSGSRRIRALAATLPLSSLVLETDAPDIRPEYAQDVPNEPFQLARFIEVWAGLR
CCCEEEECCCHHHHHHHHHCCHHHHEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCC
GMQVAPLRRALRDNTLAALALN
CCCHHHHHHHHHCCCEEEEEEC
>Mature Secondary Structure
MRFDPLPAADCLIDSHCHLDAPELAPDVDGVVARARAAGVGQLLVPAVTAGAFADVLAMR
CCCCCCCHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
ERYGCWIAFGLHPIYLDRHLDEHLDLLDAALAAHAPVAVGEIGLDFYLPALDPARQEALL
HHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHEECCCCCHHHHHHHH
VEQLKLARKHGLPVVLHVRRSVDRVLKYLREQRIECGIAHAFNGSEQQAQAFIRQGFKLG
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHCCCEEC
FGGAMTYSGSRRIRALAATLPLSSLVLETDAPDIRPEYAQDVPNEPFQLARFIEVWAGLR
CCCEEEECCCHHHHHHHHHCCHHHHEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCC
GMQVAPLRRALRDNTLAALALN
CCCHHHHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]