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The map label for this gene is lrpC [H]

Identifier: 34496016

GI number: 34496016

Start: 601756

End: 602199

Strand: Reverse

Name: lrpC [H]

Synonym: CV_0561

Alternate gene names: 34496016

Gene position: 602199-601756 (Counterclockwise)

Preceding gene: 34496020

Following gene: 34496009

Centisome position: 12.67

GC content: 63.29

Gene sequence:

>444_bases
ATGGATAGATTCGACCGCAAAATCCTCGCTGCGCTGCACGAAAATGCCAGAATCAGCTTCGCCGAACTGGCGCGGCGGGT
GAACCTGTCGGCGCCGGCGGTGGCCGACCGGGTGGCCAAATTGGAGCAGTCCGGCGTGATCACCGGCTACCACGCCCGCA
TCGACCCCAACCGCGTCGGCCTGCCGATTTCCTGCCTGATCGAATTGACAGTCAAGCACCTGGAGTACTACGTGGTGATA
GACGAGATCCGCAAGACGCCCGAAGTGATAGAGTGCGCGTCCATCACCGGCACCAGCGGCCTGATGATACGGGTGGCGGT
GGACACCATGCCGGCGCTGCAGGCGCTGATCGCGCGGCTGATGCAGTTCGGCGACACCAAGACCTCGATCATCATCGACA
TGCCGGTGCCGCCGCGCATGCCCGCGCTGCAGGAAGACGAATGA

Upstream 100 bases:

>100_bases
ACGTAGCAATCCCGCTACGCAGGCCACGCAAGAATAGGATTTTCTTCCATTTCACTTTATTATCTATCTTTATTCCGTCA
TATTTCCTTCGATTCGAAAC

Downstream 100 bases:

>100_bases
AAAAACGGCCGGGGCCCAGAGGGCGCCGGCCGGAACAGAGAACAACTCTCCCTTACAGCGTCGCGGCTCAACCTGCCACG
TGCTTGACGAAGCGCAGCAT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MDRFDRKILAALHENARISFAELARRVNLSAPAVADRVAKLEQSGVITGYHARIDPNRVGLPISCLIELTVKHLEYYVVI
DEIRKTPEVIECASITGTSGLMIRVAVDTMPALQALIARLMQFGDTKTSIIIDMPVPPRMPALQEDE

Sequences:

>Translated_147_residues
MDRFDRKILAALHENARISFAELARRVNLSAPAVADRVAKLEQSGVITGYHARIDPNRVGLPISCLIELTVKHLEYYVVI
DEIRKTPEVIECASITGTSGLMIRVAVDTMPALQALIARLMQFGDTKTSIIIDMPVPPRMPALQEDE
>Mature_147_residues
MDRFDRKILAALHENARISFAELARRVNLSAPAVADRVAKLEQSGVITGYHARIDPNRVGLPISCLIELTVKHLEYYVVI
DEIRKTPEVIECASITGTSGLMIRVAVDTMPALQALIARLMQFGDTKTSIIIDMPVPPRMPALQEDE

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=141, Percent_Identity=31.9148936170213, Blast_Score=76, Evalue=8e-16,
Organism=Escherichia coli, GI1787116, Length=142, Percent_Identity=30.2816901408451, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI87081742, Length=125, Percent_Identity=28.8, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16294; Mature: 16294

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFDRKILAALHENARISFAELARRVNLSAPAVADRVAKLEQSGVITGYHARIDPNRVG
CCHHHHHHHHHHHCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCC
LPISCLIELTVKHLEYYVVIDEIRKTPEVIECASITGTSGLMIRVAVDTMPALQALIARL
CHHHHHHHHHHHHHHHHEEEHHHHCCCCCEEHHCCCCCCCEEEEEEHHHHHHHHHHHHHH
MQFGDTKTSIIIDMPVPPRMPALQEDE
HHCCCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MDRFDRKILAALHENARISFAELARRVNLSAPAVADRVAKLEQSGVITGYHARIDPNRVG
CCHHHHHHHHHHHCCCCEEHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCC
LPISCLIELTVKHLEYYVVIDEIRKTPEVIECASITGTSGLMIRVAVDTMPALQALIARL
CHHHHHHHHHHHHHHHHEEEHHHHCCCCCEEHHCCCCCCCEEEEEEHHHHHHHHHHHHHH
MQFGDTKTSIIIDMPVPPRMPALQEDE
HHCCCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]