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The map label for this gene is yrbD [C]

Identifier: 34495902

GI number: 34495902

Start: 464570

End: 465037

Strand: Reverse

Name: yrbD [C]

Synonym: CV_0447

Alternate gene names: 34495902

Gene position: 465037-464570 (Counterclockwise)

Preceding gene: 34495903

Following gene: 34495901

Centisome position: 9.79

GC content: 62.18

Gene sequence:

>468_bases
ATGAAACGCTCTACCATTGATTTGTGGGTCGGCATCTTTGTCGCCCTCGGCATCGCCGCCGTCGTCTTCCTGTCGCTGAA
GGTGGCCAACCTGACGCCGCAGAGCGCGTCGCAGACCTATGTCGTCTACGCCGACTTCGACAACGTCGGCGGCCTGAAGG
TGAAGGCGCCGGTCAAGGAAGCCGGCGTGCTGGTGGGCCGCGTGTCCGACATCCGCCTGGATCCAAAGACCTACCGCGCC
CGCGTCGCGCTGAACATCGACAAGCAATACCAGCTCAGCGACGACGTCAGCGCCTCGATCCTGACCTCCGGCCTGCTGGG
CGAGCAGTACATCGGCTTGCAGCAGGGCGGCTCGGAGAACAATCTGGCGCCCGGCGGCACCATCACCATCACCTCGTCGG
CGCTGGTGCTGGAACAGTTGATCGGTAAATTCATGACCGGATTTACCGGCAAAGACGCAAGCAAATAG

Upstream 100 bases:

>100_bases
GCGTGTCGGCCGCCACCACCCGCACCGTGGTCACCTCGGCGCTGGTGATCCTGGCGCTGGACTTCGTGCTGACCGCCTTC
ATGTTCTAGGAAAAAAACCA

Downstream 100 bases:

>100_bases
CGTCGCAAGCGGGGCCAACCCTCCTCGCGGCACCGTGTGCCGCCCGACTCGTGAAAAATGGAATGTCGCAAATGAAGAAA
CTGCTTACCCTGTTCTGTCT

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MKRSTIDLWVGIFVALGIAAVVFLSLKVANLTPQSASQTYVVYADFDNVGGLKVKAPVKEAGVLVGRVSDIRLDPKTYRA
RVALNIDKQYQLSDDVSASILTSGLLGEQYIGLQQGGSENNLAPGGTITITSSALVLEQLIGKFMTGFTGKDASK

Sequences:

>Translated_155_residues
MKRSTIDLWVGIFVALGIAAVVFLSLKVANLTPQSASQTYVVYADFDNVGGLKVKAPVKEAGVLVGRVSDIRLDPKTYRA
RVALNIDKQYQLSDDVSASILTSGLLGEQYIGLQQGGSENNLAPGGTITITSSALVLEQLIGKFMTGFTGKDASK
>Mature_155_residues
MKRSTIDLWVGIFVALGIAAVVFLSLKVANLTPQSASQTYVVYADFDNVGGLKVKAPVKEAGVLVGRVSDIRLDPKTYRA
RVALNIDKQYQLSDDVSASILTSGLLGEQYIGLQQGGSENNLAPGGTITITSSALVLEQLIGKFMTGFTGKDASK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=158, Percent_Identity=48.7341772151899, Blast_Score=138, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 16423; Mature: 16423

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSTIDLWVGIFVALGIAAVVFLSLKVANLTPQSASQTYVVYADFDNVGGLKVKAPVKE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCHHH
AGVLVGRVSDIRLDPKTYRARVALNIDKQYQLSDDVSASILTSGLLGEQYIGLQQGGSEN
HCEEEEECCCEEECCHHEEEEEEEECCCCEECCCCCHHHHHHHCCCCCHHCCCCCCCCCC
NLAPGGTITITSSALVLEQLIGKFMTGFTGKDASK
CCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKRSTIDLWVGIFVALGIAAVVFLSLKVANLTPQSASQTYVVYADFDNVGGLKVKAPVKE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCHHH
AGVLVGRVSDIRLDPKTYRARVALNIDKQYQLSDDVSASILTSGLLGEQYIGLQQGGSEN
HCEEEEECCCEEECCHHEEEEEEEECCCCEECCCCCHHHHHHHCCCCCHHCCCCCCCCCC
NLAPGGTITITSSALVLEQLIGKFMTGFTGKDASK
CCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]