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The map label for this gene is rdgB [H]

Identifier: 34495861

GI number: 34495861

Start: 427983

End: 428303

Strand: Reverse

Name: rdgB [H]

Synonym: CV_0406

Alternate gene names: 34495861

Gene position: 428303-427983 (Counterclockwise)

Preceding gene: 34495867

Following gene: 34495860

Centisome position: 9.01

GC content: 65.11

Gene sequence:

>321_bases
ATGCAGGCACCACTTCGCAGCAAGGGACCGGAACTGCTGGCAGACCTGACCGACCACATCACGGCGGCGCTGCGCCAGCT
GGCGAACACCGAAGACAGGCAGGCGGAAAAGATCGCCCGCGAGATCACCCGCCGCATGGCCTTGCACTGGGGCGGCCAGA
ACGTCTATTTCCCGCTGGGCAAGAGCAGCAAGTCGGCCGAGCGCGACCGCCAGATCCTGGCCGAATTCAACGGCGCCAAC
CACGCCTCGCTGGCGCAGAAGCACGGCATCTCGGTGCAGTGGGTCTACAAGATCATCAAGAACGCGCGCAGCGCGTCCTG
A

Upstream 100 bases:

>100_bases
AATGCGGCACTGACATCGAGCTGACACCGGTCATCCGGCTCGCGCGGGGAGGAAATGGAACAATGGCATCCATCAGAACA
ACCTCAACGCGGGAGCGCGC

Downstream 100 bases:

>100_bases
CGCCGCCTCTCTCCAAGCGCTGACTCCGTTCGATTGACAAAAGCGGGATCGGCCGACACAGTAAGCTCACGCCATAGCAC
CGGCGCAACTATCAAAATAA

Product: bacteriophage transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MQAPLRSKGPELLADLTDHITAALRQLANTEDRQAEKIAREITRRMALHWGGQNVYFPLGKSSKSAERDRQILAEFNGAN
HASLAQKHGISVQWVYKIIKNARSAS

Sequences:

>Translated_106_residues
MQAPLRSKGPELLADLTDHITAALRQLANTEDRQAEKIAREITRRMALHWGGQNVYFPLGKSSKSAERDRQILAEFNGAN
HASLAQKHGISVQWVYKIIKNARSAS
>Mature_106_residues
MQAPLRSKGPELLADLTDHITAALRQLANTEDRQAEKIAREITRRMALHWGGQNVYFPLGKSSKSAERDRQILAEFNGAN
HASLAQKHGISVQWVYKIIKNARSAS

Specific function: Regulates pectin lyase production in response to DNA damage [H]

COG id: COG5566

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the c/mor transcriptional regulatory family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR014875 [H]

Pfam domain/function: PF08765 Mor [H]

EC number: NA

Molecular weight: Translated: 11850; Mature: 11850

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAPLRSKGPELLADLTDHITAALRQLANTEDRQAEKIAREITRRMALHWGGQNVYFPLG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC
KSSKSAERDRQILAEFNGANHASLAQKHGISVQWVYKIIKNARSAS
CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQAPLRSKGPELLADLTDHITAALRQLANTEDRQAEKIAREITRRMALHWGGQNVYFPLG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC
KSSKSAERDRQILAEFNGANHASLAQKHGISVQWVYKIIKNARSAS
CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7715460 [H]