Click here to switch to the map view.

The map label for this gene is exbD2 [H]

Identifier: 34495853

GI number: 34495853

Start: 415481

End: 415891

Strand: Reverse

Name: exbD2 [H]

Synonym: CV_0398

Alternate gene names: 34495853

Gene position: 415891-415481 (Counterclockwise)

Preceding gene: 34495854

Following gene: 34495852

Centisome position: 8.75

GC content: 68.86

Gene sequence:

>411_bases
ATGGCGTTCGGTAGCTTCAACCAGGGGCCGGCCGCGCCGATGGCCGAGCCCAACACCACGCCGCTGGTCGACGTGATGCT
GGTGCTGCTGGTGGTGTTCATCATCACCACGCCGCTGCTGACCAACGCGGTCAAGGTGGACCTGCCGCGCGCCCAGGCCG
CCGAGCACCAGGACAAGCCCGAGCAGATCCGCCTGGTGGTGGATGCCGCCGGCAAGCTGTTCTGGGATGACCAGCCGGTG
GCCGAGACCGATCTGCCCGCCCGCTTCGCCGCAGCCGCCGCCGCCAATCCCAACGTCGAGCTGCACTTGTCCGCCGACAA
GGCGGTGCGCTACGAAACCGTGGCCAAGGCGCTGGCCGCCGCGCAGCAGAACGGCGTAGGCAAGATAGGCTTCGTCACCG
CCGCGCAGTAA

Upstream 100 bases:

>100_bases
TACAACGCGCTGACCCGCGCCCAGCGCGTGATGTCGCAGGAGCTGGACTACTTCGCCCACGACCTGCACGCCCAGTTGCT
GACCCAGTCCGGAGACGGCC

Downstream 100 bases:

>100_bases
AGCGCCGGACCTCCGCCCCGCCCCGATGCCAGAGGCGGGGCGCTCTTATCCCGCAGCCCTGGACGGCAGGTCTCTGCGGC
GCGCCTGCCCTGGCCCGCCG

Product: biopolymer transport exbD transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MAFGSFNQGPAAPMAEPNTTPLVDVMLVLLVVFIITTPLLTNAVKVDLPRAQAAEHQDKPEQIRLVVDAAGKLFWDDQPV
AETDLPARFAAAAAANPNVELHLSADKAVRYETVAKALAAAQQNGVGKIGFVTAAQ

Sequences:

>Translated_136_residues
MAFGSFNQGPAAPMAEPNTTPLVDVMLVLLVVFIITTPLLTNAVKVDLPRAQAAEHQDKPEQIRLVVDAAGKLFWDDQPV
AETDLPARFAAAAAANPNVELHLSADKAVRYETVAKALAAAQQNGVGKIGFVTAAQ
>Mature_135_residues
AFGSFNQGPAAPMAEPNTTPLVDVMLVLLVVFIITTPLLTNAVKVDLPRAQAAEHQDKPEQIRLVVDAAGKLFWDDQPVA
ETDLPARFAAAAAANPNVELHLSADKAVRYETVAKALAAAQQNGVGKIGFVTAAQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=120, Percent_Identity=37.5, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14344; Mature: 14212

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGSFNQGPAAPMAEPNTTPLVDVMLVLLVVFIITTPLLTNAVKVDLPRAQAAEHQDKP
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHCCCCH
EQIRLVVDAAGKLFWDDQPVAETDLPARFAAAAAANPNVELHLSADKAVRYETVAKALAA
HHEEEEEECCCCEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
AQQNGVGKIGFVTAAQ
HHHCCCCCEEEEEECC
>Mature Secondary Structure 
AFGSFNQGPAAPMAEPNTTPLVDVMLVLLVVFIITTPLLTNAVKVDLPRAQAAEHQDKP
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHCCCCH
EQIRLVVDAAGKLFWDDQPVAETDLPARFAAAAAANPNVELHLSADKAVRYETVAKALAA
HHEEEEEECCCCEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
AQQNGVGKIGFVTAAQ
HHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]