Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 34495823

GI number: 34495823

Start: 384450

End: 385664

Strand: Reverse

Name: rpfG [H]

Synonym: CV_0368

Alternate gene names: 34495823

Gene position: 385664-384450 (Counterclockwise)

Preceding gene: 34495826

Following gene: 34495821

Centisome position: 8.12

GC content: 62.55

Gene sequence:

>1215_bases
ATGATCAAGTGCATCGACGTCAACGATCTCAAGGTCGGCATGTACATCCACGACCTCAACTGCGACTGGATGTCCCATCC
CTTTCTGGTCAACCGCTTCAAGGTGAAAGACGAGAGCGAGATCCGCAAGATCGCCGACGCCGGCATCCACGAAGTCTATA
TCGATACCCGGAAGGGCATGGATCTGCCCTCCGCCCGCAGCGAAGGCGAAGTGCGCAAGCAGCTGGAAAGCGAGCTGCGC
GAGATCGCCTCGCGCGAGCGCACGGTGACCCGGCACGTGGAGGCGGCCGAAGAATTCGGCCGCGCGCAAACCATCCATCA
CGAGGCCAACCAGATCATCCGCGACATCCTGCAGGACGTGCGGCTGGGCAAGCAGGTGGAGCTGGAACAGGTGGAGCCGC
AGGTGGAAAAACTGACCGGCTCCATCCTGCGCAACGGCGGCGCGCTGCTGTCGCTGTGCCGGATCAAGGACAAGGACAAC
TACACCTTCCAGCACTCGGTCAGCGTCGGCGCGTTGATGGTCAGCTTCTGCAACGCGCTGGGCATGAGCAAGGAAGTGAT
ACACCACGCCGGCATCGGCGGCATGCTGCACGACATCGGCAAGATGAAGGTGCCCGACTCCATCCTGAACAAGCCCGGCA
AGCTGACCGAGCAGGAGTTCATGGTGATGAAATGCCACGTGGTGGAGAGCCAGAAGATCCTGCACGCCACCCGCGGCATC
TCCGAAACCGCGGTGCTGGTGGCCGGCCAGCACCATGAGCGCCACGACGGCAGCGGCTATCCGGCCGGGCTCAAGGGCGA
GGAGATTTCGCAGCTGGGACAGATGGCGGCCATCGTCGACGTCTACGACGCCCTCACCTCCAACCGCTGCTACCACAAGG
GCATGCCGCCCACCGACGCGCTGCGCAAGATCTACGAATGGTCGAAATTCCACTTCAATCCGGAGCTGGTGCAGGCCTTC
ATGCGGGTGATAGGCATCTACCCGGTCGGCACCCTGGTGCGGCTGGAAAGCGGCCGCCTGGGCGTGGTGGTGGAGCAGAA
CGAGGACAATCTGGTTTCGCCCAAGGTGAAGGTGTTCTTCAGCACCAAGAGCAACACCCACATTCCGCCCGAGGTCGTGG
ACCTGTCGCGCAGGATGGGCTTCGGCGGCGGCGACCGCATCGTCAAGCACGAGTCGCCGGAGAAGTGGAAGATAGACCCG
CTGCGCTTTCTGTAG

Upstream 100 bases:

>100_bases
TAGTCGCCTTGTCCGTCAAGACGATGCTTGCCGGCGGTTCACATCGTCGAACATAATGATTTGCTGAATTTCATACCGCG
GCGACAGGCCGCCACGCGCC

Downstream 100 bases:

>100_bases
GGCGGCAGCCCGGCCCGGCCGGGCGTTCCGCCGCCCCATCCCTGCAGTCGCAATCGATCTGAGCCAAGCGTTAAGGCGGT
ATGCCCGCACAGCGGGCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MIKCIDVNDLKVGMYIHDLNCDWMSHPFLVNRFKVKDESEIRKIADAGIHEVYIDTRKGMDLPSARSEGEVRKQLESELR
EIASRERTVTRHVEAAEEFGRAQTIHHEANQIIRDILQDVRLGKQVELEQVEPQVEKLTGSILRNGGALLSLCRIKDKDN
YTFQHSVSVGALMVSFCNALGMSKEVIHHAGIGGMLHDIGKMKVPDSILNKPGKLTEQEFMVMKCHVVESQKILHATRGI
SETAVLVAGQHHERHDGSGYPAGLKGEEISQLGQMAAIVDVYDALTSNRCYHKGMPPTDALRKIYEWSKFHFNPELVQAF
MRVIGIYPVGTLVRLESGRLGVVVEQNEDNLVSPKVKVFFSTKSNTHIPPEVVDLSRRMGFGGGDRIVKHESPEKWKIDP
LRFL

Sequences:

>Translated_404_residues
MIKCIDVNDLKVGMYIHDLNCDWMSHPFLVNRFKVKDESEIRKIADAGIHEVYIDTRKGMDLPSARSEGEVRKQLESELR
EIASRERTVTRHVEAAEEFGRAQTIHHEANQIIRDILQDVRLGKQVELEQVEPQVEKLTGSILRNGGALLSLCRIKDKDN
YTFQHSVSVGALMVSFCNALGMSKEVIHHAGIGGMLHDIGKMKVPDSILNKPGKLTEQEFMVMKCHVVESQKILHATRGI
SETAVLVAGQHHERHDGSGYPAGLKGEEISQLGQMAAIVDVYDALTSNRCYHKGMPPTDALRKIYEWSKFHFNPELVQAF
MRVIGIYPVGTLVRLESGRLGVVVEQNEDNLVSPKVKVFFSTKSNTHIPPEVVDLSRRMGFGGGDRIVKHESPEKWKIDP
LRFL
>Mature_404_residues
MIKCIDVNDLKVGMYIHDLNCDWMSHPFLVNRFKVKDESEIRKIADAGIHEVYIDTRKGMDLPSARSEGEVRKQLESELR
EIASRERTVTRHVEAAEEFGRAQTIHHEANQIIRDILQDVRLGKQVELEQVEPQVEKLTGSILRNGGALLSLCRIKDKDN
YTFQHSVSVGALMVSFCNALGMSKEVIHHAGIGGMLHDIGKMKVPDSILNKPGKLTEQEFMVMKCHVVESQKILHATRGI
SETAVLVAGQHHERHDGSGYPAGLKGEEISQLGQMAAIVDVYDALTSNRCYHKGMPPTDALRKIYEWSKFHFNPELVQAF
MRVIGIYPVGTLVRLESGRLGVVVEQNEDNLVSPKVKVFFSTKSNTHIPPEVVDLSRRMGFGGGDRIVKHESPEKWKIDP
LRFL

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 45487; Mature: 45487

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKCIDVNDLKVGMYIHDLNCDWMSHPFLVNRFKVKDESEIRKIADAGIHEVYIDTRKGM
CEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCC
DLPSARSEGEVRKQLESELREIASRERTVTRHVEAAEEFGRAQTIHHEANQIIRDILQDV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
RLGKQVELEQVEPQVEKLTGSILRNGGALLSLCRIKDKDNYTFQHSVSVGALMVSFCNAL
HCCCCCCHHHHCHHHHHHHHHHHHCCCHHHHEEEECCCCCCEEEECCHHHHHHHHHHHHH
GMSKEVIHHAGIGGMLHDIGKMKVPDSILNKPGKLTEQEFMVMKCHVVESQKILHATRGI
CCCHHHHHHCCCCHHHHHHCCCCCCHHHHCCCCCCCHHHHEEEEEEHHHHHHHHHHHCCC
SETAVLVAGQHHERHDGSGYPAGLKGEEISQLGQMAAIVDVYDALTSNRCYHKGMPPTDA
CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LRKIYEWSKFHFNPELVQAFMRVIGIYPVGTLVRLESGRLGVVVEQNEDNLVSPKVKVFF
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCEEEEEE
STKSNTHIPPEVVDLSRRMGFGGGDRIVKHESPEKWKIDPLRFL
ECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHCCC
>Mature Secondary Structure
MIKCIDVNDLKVGMYIHDLNCDWMSHPFLVNRFKVKDESEIRKIADAGIHEVYIDTRKGM
CEEEEECCCEEEEEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCC
DLPSARSEGEVRKQLESELREIASRERTVTRHVEAAEEFGRAQTIHHEANQIIRDILQDV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
RLGKQVELEQVEPQVEKLTGSILRNGGALLSLCRIKDKDNYTFQHSVSVGALMVSFCNAL
HCCCCCCHHHHCHHHHHHHHHHHHCCCHHHHEEEECCCCCCEEEECCHHHHHHHHHHHHH
GMSKEVIHHAGIGGMLHDIGKMKVPDSILNKPGKLTEQEFMVMKCHVVESQKILHATRGI
CCCHHHHHHCCCCHHHHHHCCCCCCHHHHCCCCCCCHHHHEEEEEEHHHHHHHHHHHCCC
SETAVLVAGQHHERHDGSGYPAGLKGEEISQLGQMAAIVDVYDALTSNRCYHKGMPPTDA
CCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LRKIYEWSKFHFNPELVQAFMRVIGIYPVGTLVRLESGRLGVVVEQNEDNLVSPKVKVFF
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCEEEEEE
STKSNTHIPPEVVDLSRRMGFGGGDRIVKHESPEKWKIDPLRFL
ECCCCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]