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The map label for this gene is rsmB [H]

Identifier: 339905983

GI number: 339905983

Start: 3871014

End: 3872465

Strand: Reverse

Name: rsmB [H]

Synonym: NA

Alternate gene names: 339905983

Gene position: 3872465-3871014 (Counterclockwise)

Preceding gene: 238028942

Following gene: 238028940

Centisome position: 99.13

GC content: 75.21

Gene sequence:

>1452_bases
ATGACCCAGCCTCGTCCTTCCCGCCCGTCCCGTTCCCGCCAGCCGAAGCCGTCGACGCCGCCGGCGGCCGCATCCGGCGC
GCCCGCCGCGCGCGCGCTGCGCCTGTCGCCGCTGCATCTGCCGCCCGATTCACTCGGCTTTGCGCTCGACGGTGCGGCCC
GCGCGGTCACGGCGGTCTCGCACGGCACGGCGCTGCCCGCCGCGCTCGCGGCGGTGCAGGCCGCGCAGCCGGCCGCCTCG
CGGCCGACCTCGCGCGGCGCGATCCAGGACATCGCGTACCGCACCATGCGCCGGCTCGGCACCAGCGACTGGCTGATCGG
CACGCTGGTCGGCAAGGCGCCGCCCGAGCACGTGCGCGCGCTGCTTGCCTGCGCGTTCGCGCTGCTCGTCGACGCGCCCG
CCGAGGCTGCCTACACGCCGTTCACGGTGGTCGACCAGGCGGTGAGCGCGATCGGCGCGCGGCGCGAGTTCGCGTTCGCG
AAGGGGCTCGTCAACGCGGTGCTGCGCCGTTTCCTGCGCGAGCGCGAAACGCTCGTCGCGCAAGCGCAGGCCGATCGTGT
CGCGCGCTGGAACTATCGTCCGTGGTGGATCGAGGCGCTCGAGCGGGCCTGGCCCGATGACTGGCAGGCGATCCTCGCGG
CCGGCGACCTGGCCGGCCCGCTGACGCTGCGCGTGAACGCCCGGCAGGCGAGCGTCGCGGCCTATCTCGCGACGCTGCGC
GAGCAGGGCATCGATGCGGCCGCGGCCGGCCGCTACGCGGTGCGGCTCGCGGCGCCGCTGCCGGTCGAGCGGATTCCCGG
CTTCGCCGACGGCATGGTGTCGGTGCAGGACGCCGGCGCGCAGCTCGCGGCCGAATGGCTCGGCGCGACCGACGGCATGC
GCGTGCTCGACGCCTGCGCGGCACCGGGCGGCAAGACCGGGCACTTGCTCGAACTGGCCGACCTCGAGGTGGTGGCGCTC
GAGAGCGACGCGTCGCGCGCCACGCGCATCGGCGAGAACCTGGCGCGCCTGAAGCTGGCCGCCGAGGTGCGCGTGGGCGA
CGCCGGCGCGCCCGAGGGCTGGCACGACGGCCGGCCGTTCGATCGGATCCTCGCCGACGTGCCGTGCTCGGCCTCGGGCA
TCGTGCGGCGCCATCCCGACATCCGCTGGCTGCGCCGCGAGACCGACATCGCCGCGCTCGTCGCCGAGCAGCGCCGCATC
CTGCAGGCGCTCTGGCCGCTGCTGAAGCCGGGCGGCGAGCTGCTGTACGTGACCTGCTCGGTGTTCCCCGAGGAAGGCGA
GGCGCAGGCGCGCTGGTTTGAAGGCGCGGTTCAAGATGCGGTACGATTGGACGCGCCCGGGCAGCTGCTGCCGCGGGCCG
CCGCGGGCCGGCTGCCGTATCCCGGCCACGACGAGGCCGCGCGGCAGGCCGATCACGACGGATTCTTCTACGCGCGCTTT
CAGAAACGGTGA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: 16S rRNA methyltransferase B

Products: NA

Alternate protein names: 16S rRNA m5C967 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 483; Mature: 482

Protein sequence:
NA

Sequences:

>Translated_483_residues
MTQPRPSRPSRSRQPKPSTPPAAASGAPAARALRLSPLHLPPDSLGFALDGAARAVTAVSHGTALPAALAAVQAAQPAAS
RPTSRGAIQDIAYRTMRRLGTSDWLIGTLVGKAPPEHVRALLACAFALLVDAPAEAAYTPFTVVDQAVSAIGARREFAFA
KGLVNAVLRRFLRERETLVAQAQADRVARWNYRPWWIEALERAWPDDWQAILAAGDLAGPLTLRVNARQASVAAYLATLR
EQGIDAAAAGRYAVRLAAPLPVERIPGFADGMVSVQDAGAQLAAEWLGATDGMRVLDACAAPGGKTGHLLELADLEVVAL
ESDASRATRIGENLARLKLAAEVRVGDAGAPEGWHDGRPFDRILADVPCSASGIVRRHPDIRWLRRETDIAALVAEQRRI
LQALWPLLKPGGELLYVTCSVFPEEGEAQARWFEGAVQDAVRLDAPGQLLPRAAAGRLPYPGHDEAARQADHDGFFYARF
QKR
>Mature_482_residues
TQPRPSRPSRSRQPKPSTPPAAASGAPAARALRLSPLHLPPDSLGFALDGAARAVTAVSHGTALPAALAAVQAAQPAASR
PTSRGAIQDIAYRTMRRLGTSDWLIGTLVGKAPPEHVRALLACAFALLVDAPAEAAYTPFTVVDQAVSAIGARREFAFAK
GLVNAVLRRFLRERETLVAQAQADRVARWNYRPWWIEALERAWPDDWQAILAAGDLAGPLTLRVNARQASVAAYLATLRE
QGIDAAAAGRYAVRLAAPLPVERIPGFADGMVSVQDAGAQLAAEWLGATDGMRVLDACAAPGGKTGHLLELADLEVVALE
SDASRATRIGENLARLKLAAEVRVGDAGAPEGWHDGRPFDRILADVPCSASGIVRRHPDIRWLRRETDIAALVAEQRRIL
QALWPLLKPGGELLYVTCSVFPEEGEAQARWFEGAVQDAVRLDAPGQLLPRAAAGRLPYPGHDEAARQADHDGFFYARFQ
KR

Specific function: Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=342, Percent_Identity=25.7309941520468, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI76150623, Length=342, Percent_Identity=25.7309941520468, Blast_Score=102, Evalue=9e-22,
Organism=Homo sapiens, GI32698918, Length=189, Percent_Identity=31.7460317460317, Blast_Score=79, Evalue=9e-15,
Organism=Escherichia coli, GI2367212, Length=441, Percent_Identity=39.2290249433107, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI87081985, Length=279, Percent_Identity=31.8996415770609, Blast_Score=97, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17536757, Length=275, Percent_Identity=30.1818181818182, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25143471, Length=204, Percent_Identity=32.843137254902, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324268, Length=331, Percent_Identity=27.4924471299094, Blast_Score=95, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6319447, Length=176, Percent_Identity=36.3636363636364, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI22024126, Length=254, Percent_Identity=27.5590551181102, Blast_Score=102, Evalue=8e-22,
Organism=Drosophila melanogaster, GI24668781, Length=243, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21356513, Length=243, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21355201, Length=304, Percent_Identity=26.3157894736842, Blast_Score=76, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: =2.1.1.176 [H]

Molecular weight: Translated: 51756; Mature: 51625

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPRPSRPSRSRQPKPSTPPAAASGAPAARALRLSPLHLPPDSLGFALDGAARAVTAVS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCHHCCEEECCHHHHHHHHH
HGTALPAALAAVQAAQPAASRPTSRGAIQDIAYRTMRRLGTSDWLIGTLVGKAPPEHVRA
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHH
LLACAFALLVDAPAEAAYTPFTVVDQAVSAIGARREFAFAKGLVNAVLRRFLRERETLVA
HHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAQADRVARWNYRPWWIEALERAWPDDWQAILAAGDLAGPLTLRVNARQASVAAYLATLR
HHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHH
EQGIDAAAAGRYAVRLAAPLPVERIPGFADGMVSVQDAGAQLAAEWLGATDGMRVLDACA
HHCCCHHHCCCEEEEEECCCCHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHC
APGGKTGHLLELADLEVVALESDASRATRIGENLARLKLAAEVRVGDAGAPEGWHDGRPF
CCCCCCCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCH
DRILADVPCSASGIVRRHPDIRWLRRETDIAALVAEQRRILQALWPLLKPGGELLYVTCS
HHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
VFPEEGEAQARWFEGAVQDAVRLDAPGQLLPRAAAGRLPYPGHDEAARQADHDGFFYARF
ECCCCCCHHHHHHHHHHHHHHCCCCCCHHCCHHHCCCCCCCCCCHHHHHCCCCCEEEEEE
QKR
ECC
>Mature Secondary Structure 
TQPRPSRPSRSRQPKPSTPPAAASGAPAARALRLSPLHLPPDSLGFALDGAARAVTAVS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCHHCCEEECCHHHHHHHHH
HGTALPAALAAVQAAQPAASRPTSRGAIQDIAYRTMRRLGTSDWLIGTLVGKAPPEHVRA
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHH
LLACAFALLVDAPAEAAYTPFTVVDQAVSAIGARREFAFAKGLVNAVLRRFLRERETLVA
HHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAQADRVARWNYRPWWIEALERAWPDDWQAILAAGDLAGPLTLRVNARQASVAAYLATLR
HHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHH
EQGIDAAAAGRYAVRLAAPLPVERIPGFADGMVSVQDAGAQLAAEWLGATDGMRVLDACA
HHCCCHHHCCCEEEEEECCCCHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHC
APGGKTGHLLELADLEVVALESDASRATRIGENLARLKLAAEVRVGDAGAPEGWHDGRPF
CCCCCCCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCH
DRILADVPCSASGIVRRHPDIRWLRRETDIAALVAEQRRILQALWPLLKPGGELLYVTCS
HHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
VFPEEGEAQARWFEGAVQDAVRLDAPGQLLPRAAAGRLPYPGHDEAARQADHDGFFYARF
ECCCCCCHHHHHHHHHHHHHHCCCCCCHHCCHHHCCCCCCCCCCHHHHHCCCCCEEEEEE
QKR
ECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA