Click here to switch to the map view.

The map label for this gene is rpsF [H]

Identifier: 33864523

GI number: 33864523

Start: 2391976

End: 2392350

Strand: Direct

Name: rpsF [H]

Synonym: PMT2259

Alternate gene names: 33864523

Gene position: 2391976-2392350 (Clockwise)

Preceding gene: 33864522

Following gene: 33864524

Centisome position: 99.22

GC content: 53.87

Gene sequence:

>375_bases
ATGAGTCAACAACCTTATTACGAAACCATGTACATCCTCCGGCCGGACATCCCGGAAGAGGAAGTCGAAACCCATGTCAC
CAAGTACCGCGAGATGGTGACTGAAGCTGGGGCAGAGGTCCTCGACAATCAAATGCGTGGCAAGCGTCGCCTGGCCTATC
CAATCTCAAATCACAAGGAAGGCATCTATGTGCAGCTAAGCCACAACGGCAATGGACAACAAGTGGCCGTGCTGGAAAAA
GCCATGCGTCTCAGTGAAGACGTGATTCGCTACCTAACTGTGAAGCAAGAAGGCCCTCTACCCGCGCCCAGAATCGTCCC
TGGGAGTGAGCCTGAACCAGTACAACAGCAGGAAGCCGCAGCAGTAGAAGCCTGA

Upstream 100 bases:

>100_bases
CCGTTCGCATGCAACTCTCCTAAACACTGACCACAAAGAGATAGGCTGGTCGTTCCGTCGCTCACTGCCGTGAGCCTTTA
AGTCCCTGTCGGAACACCTG

Downstream 100 bases:

>100_bases
TCAACACCATTGTTGAAAAAGCTGCTTGGCGTTAGCTTTCTGCCATGCGCACTGCCCATCAGGACCATCAGACCCCTCTT
CCAATTTGGAAGAAACAGGA

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MSQQPYYETMYILRPDIPEEEVETHVTKYREMVTEAGAEVLDNQMRGKRRLAYPISNHKEGIYVQLSHNGNGQQVAVLEK
AMRLSEDVIRYLTVKQEGPLPAPRIVPGSEPEPVQQQEAAAVEA

Sequences:

>Translated_124_residues
MSQQPYYETMYILRPDIPEEEVETHVTKYREMVTEAGAEVLDNQMRGKRRLAYPISNHKEGIYVQLSHNGNGQQVAVLEK
AMRLSEDVIRYLTVKQEGPLPAPRIVPGSEPEPVQQQEAAAVEA
>Mature_123_residues
SQQPYYETMYILRPDIPEEEVETHVTKYREMVTEAGAEVLDNQMRGKRRLAYPISNHKEGIYVQLSHNGNGQQVAVLEKA
MRLSEDVIRYLTVKQEGPLPAPRIVPGSEPEPVQQQEAAAVEA

Specific function: Binds together with S18 to 16S ribosomal RNA [H]

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000529
- InterPro:   IPR020815
- InterPro:   IPR020814
- InterPro:   IPR014717 [H]

Pfam domain/function: PF01250 Ribosomal_S6 [H]

EC number: NA

Molecular weight: Translated: 14063; Mature: 13932

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQPYYETMYILRPDIPEEEVETHVTKYREMVTEAGAEVLDNQMRGKRRLAYPISNHKE
CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
GIYVQLSHNGNGQQVAVLEKAMRLSEDVIRYLTVKQEGPLPAPRIVPGSEPEPVQQQEAA
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
AVEA
HCCC
>Mature Secondary Structure 
SQQPYYETMYILRPDIPEEEVETHVTKYREMVTEAGAEVLDNQMRGKRRLAYPISNHKE
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
GIYVQLSHNGNGQQVAVLEKAMRLSEDVIRYLTVKQEGPLPAPRIVPGSEPEPVQQQEAA
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
AVEA
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA