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The map label for this gene is ygcF [H]

Identifier: 33864484

GI number: 33864484

Start: 2348123

End: 2348803

Strand: Direct

Name: ygcF [H]

Synonym: PMT2220

Alternate gene names: 33864484

Gene position: 2348123-2348803 (Clockwise)

Preceding gene: 33864483

Following gene: 33864486

Centisome position: 97.4

GC content: 52.42

Gene sequence:

>681_bases
ATGACCGGCAATCTGCCGGTAGTAGAAACCTTCCATTCCCTACAAGGAGAAGGAGCCCATGTCGGTCGCAGCGCCTTCTT
CATCAGGCTCGCCGGCTGTGATGTCGGCTGTTCATGGTGCGACACCAAGCACTCTTGGAACTCGAGAAACCATCCGCAAA
TCACGCTTGAACAACTAGCAGAGGAAACAGCAACAGCAGCAAAAGATGGCGCGGCCTTTGTGGTGTTGACCGGGGGTGAG
CCATTGCAACACAACATCGCTCCCCTATGTGAAGCCCTACACAGGGCCACAGAAACAAACCACGGCGGGCCATTAGCAAT
CCATCTTGAAACCAGCGGAGTGAATCAGCTCAGCGGTGTTCCCACATGGATCACCCTCTCCCCAAAGCGCCATGCGCCAC
CTCGCACAGACTTATTAGCAGCTTGTCATGAGCTTAAAGTTGTAGTTCATGAAACAGACGATCTGAACTTCGCCGAAGAC
ATGGCCAAAGCTGCCTTAGAAGCGAGAAAGAACGACAACGCCTCACAATCACGCCTCAGCAACACATCAAAGGAACCACT
TCTCTTTCTGCAACCTGGCTGGAAAACAACAAGAGGTCAACAACTAGCTTTCGAGCACGTACAAAGTCATCCCCACTGGA
GGCTCAGCATGCAAACCCACAAGTGGCTTGGTATACGTTGA

Upstream 100 bases:

>100_bases
TTGAGGCAGCTCAACTACGGCTACCAGCCTCACCTGACGAAGCCCTACGCCGACAAAGCCAGACCAACATCTCCGCTCAG
GAGCAACCCAGCCGGATTGG

Downstream 100 bases:

>100_bases
ACCTCAAAGCTTGATTGCCTCCCGCTGAGTGATCTCAGCCTTCCACAACCGCCAACGCACCTCTAAGCCGTCAGGTACAT
CAACCACTATCGGAAAGGAG

Product: organic radical activating protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTGNLPVVETFHSLQGEGAHVGRSAFFIRLAGCDVGCSWCDTKHSWNSRNHPQITLEQLAEETATAAKDGAAFVVLTGGE
PLQHNIAPLCEALHRATETNHGGPLAIHLETSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAED
MAKAALEARKNDNASQSRLSNTSKEPLLFLQPGWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR

Sequences:

>Translated_226_residues
MTGNLPVVETFHSLQGEGAHVGRSAFFIRLAGCDVGCSWCDTKHSWNSRNHPQITLEQLAEETATAAKDGAAFVVLTGGE
PLQHNIAPLCEALHRATETNHGGPLAIHLETSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAED
MAKAALEARKNDNASQSRLSNTSKEPLLFLQPGWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR
>Mature_225_residues
TGNLPVVETFHSLQGEGAHVGRSAFFIRLAGCDVGCSWCDTKHSWNSRNHPQITLEQLAEETATAAKDGAAFVVLTGGEP
LQHNIAPLCEALHRATETNHGGPLAIHLETSGVNQLSGVPTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAEDM
AKAALEARKNDNASQSRLSNTSKEPLLFLQPGWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=239, Percent_Identity=31.7991631799163, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24861; Mature: 24730

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGNLPVVETFHSLQGEGAHVGRSAFFIRLAGCDVGCSWCDTKHSWNSRNHPQITLEQLA
CCCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHH
EETATAAKDGAAFVVLTGGEPLQHNIAPLCEALHRATETNHGGPLAIHLETSGVNQLSGV
HHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHCCC
PTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAEDMAKAALEARKNDNASQSRLS
CEEEEECCCCCCCCHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHC
NTSKEPLLFLQPGWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR
CCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
TGNLPVVETFHSLQGEGAHVGRSAFFIRLAGCDVGCSWCDTKHSWNSRNHPQITLEQLA
CCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHH
EETATAAKDGAAFVVLTGGEPLQHNIAPLCEALHRATETNHGGPLAIHLETSGVNQLSGV
HHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHCCC
PTWITLSPKRHAPPRTDLLAACHELKVVVHETDDLNFAEDMAKAALEARKNDNASQSRLS
CEEEEECCCCCCCCHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHC
NTSKEPLLFLQPGWKTTRGQQLAFEHVQSHPHWRLSMQTHKWLGIR
CCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]