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The map label for this gene is yccM [C]

Identifier: 33864464

GI number: 33864464

Start: 2325336

End: 2327423

Strand: Direct

Name: yccM [C]

Synonym: PMT2200

Alternate gene names: 33864464

Gene position: 2325336-2327423 (Clockwise)

Preceding gene: 33864463

Following gene: 33864467

Centisome position: 96.45

GC content: 57.04

Gene sequence:

>2088_bases
ATGGAGTCCACCACCCCCAGCCATCAATGCATGATGCGGATGGCTCCCTACCTAATCGGTCGCCCACGCCGCGGCGTGGT
GGGAGGCAGCCGTTATGCCTGCAAGTTACGGGAATCCATTCGCCAAGCAGCCAATGATCCAGAGCGCAAGCCAGTCTTAA
TCAGTGGTGAACCAGGCTTAGAAAAAGACAACATCGCCAGACTGGTGCATTTCGGCTCTGCCGATCGACGCCTTCTTTTG
ATGCGCTTCGATGCCAGCAACATACGAGGCCAAGGCGTTGAACTTTTTGGCAGAGAAGGCTCTCATGAACTGTCTCTGCT
CGATTGCCTAGGGAATGGCAACCTTCTGATCGACTGCATTGATCTTGCAGAGCCTCAACTGCAAGCACGTCTGATTGCCC
TTGCCACTGAAGGCCACCCTGCCTTCTCGGGGCGGATCTTGTTGACTGCCGAATCAAGCCTCAAAGAGCTAGAGGGGATA
GCAACTCAGATCAGAGTGCCACCCTTAAGAGTGCGACGATCCGATCTGGGCGATTGGCTCCGTTACAGCCTGCGCCAGCG
CAGCCCCAGTCTGGGCTGGAGTCGCCCTCCCGAGTTGCCCGAAGCAATTGTCAGGCGACTGCAAAGCCACGATTTCCCGA
ACAACATCCGCGAATTGGACAGCGTGGTGGAACGGGCCCTGCAACAAGCCCGCAGCCAGGCCGCGGCTGAGCAAGCAAGC
GCTGCAATCACCATGGTCCTACCCGCAGCTTTGCCGGAAGACGTGTTCTGGGTGAACAGCCGGGAACCCAACCTGCGCTT
TGAGATCTGGCGCTGGAAGCCTCAACTACGTCAGTTGATGCGCTCACCCCAACTCTGGAACGGCTTGCTTTTTGGGCTGG
TGAGCTGGGTCTTCGTGCTAGTGAACCTGTGGCTGTGGTTTGGCCCACAAGACAGGGCACATAACAGCATGCTCAAATTT
TTCTGGGCCTGGTGGTGGCCTCTGATCCTGCTGACTTACCCGCTAGTTGGGCGACTTTGGTGTGCAGTCTGTCCATTCAT
GGTCTGGGGCGAAATTGCTCAGAACAGCAAAAAGGCTCTCGCAAAATTGATCTCAACCTTGGGTTTACCTACTGGTTGGT
TGCAACCAAGGCTCTGGCCCCATGGCGATCACGACAGTTGGGGCGCACCAGTTTTGGCGATAGGGTTCGCAGCGATCCTG
ATCTGGGAAGAGGTCTGGAACCTAGAAGACACAGCCCGACTCAGCAGTTACCTCTTGCTACTGATTACCTCAGGAGCTGT
GCTGTGTTCACTGGTCTTCGAAAAGCGATTCTGGTGCCGCTATCTCTGCCCAGTTGGCGGCATGAATGGCCTATTCGCAA
AGCTTTCGATCCTCGAATTACGTGCGCAATCGGGCACTTGCTCAGGGAGTTGCACGTCCTACGCCTGTTTCAAAGGAGGT
CCTGCTGAAGGCGAAGGTATGGCTAGCGAAGGTTGCCCCCTGGGCACCCATCCAGCCCATCTCAGCGACAACCGCAACTG
TGTCCTTTGTCTGACCTGCGCACAAGCATGCCCGCACCACTCCGTGCAATTGCGACTGCGGCCTCCAGCCGCAGATCTGC
AACGCAGCATGCATGGTCCAAAAGGCGAGAAGGGATTGATCTTGGTGTTGGCCGGTGGAATCACCCTGCATCATTGGCAA
CGACTACTGGGCTGGTTGCCCCTGGCTCCAGAGTCTCTCCAGGAGGGGCCCCTTTTTGCGCGGCTGGTGTTTGCTGCACT
AGCGCTAAGCCTGCCAGCAGCTGCAGGTCTGTGGGTGGAGCGTCGCTGGCTGTACACCGCCTTACCACTGTTATGGAGCG
TGCTCTTGGCGCGTCATCTACCGATTGGCATGGCAGAGGCCGGCACTGTGTTGCCGATTGGTTGGCCTCAATGGAGCGCC
AATCCCAAAGTGATTGGCTTCTGCCAGAGCTTGGCCATTGCGGTTGGTTGGCTTGGTTGTGTGGTGTTACTTCGGCGTCT
AATCAGCCGCCAGCGACAACCCTGGTTAACAGCTAGCGGAGCATTGTTGGTCTTGGCGCTGGCTAGCCGCTGGGTAGTGC
ACATCTAA

Upstream 100 bases:

>100_bases
CGAGCGCTTGGCCCCATGAATTAATTGGTCAAGATGAGCTTGAGCCGCAATGGCTTGCTGTCAGCTTGGATGAGTTGGAT
GTCCGTCGTGTCTGATCGGT

Downstream 100 bases:

>100_bases
AAAGGAGAATCCCGATTAGCGAGGAGATGGCAGCTCCGAACAACTTTTGCCGTCAGTAGCGATGTCAATCTGAACCTTGG
TCAACGGCGCCAAAAAAGCA

Product: 4Fe-4S ferredoxin, iron-sulfur binding domain:sigma-54 factor

Products: NA

Alternate protein names: Sigma-54 Interaction Domain Family; Polyferredoxin-Like Protein; Nitrogen Regulatory Protein; Transcriptional Regulator; Sigma-54 Factor; Transcriptional Regulator Protein; Polyferredoxin

Number of amino acids: Translated: 695; Mature: 695

Protein sequence:

>695_residues
MESTTPSHQCMMRMAPYLIGRPRRGVVGGSRYACKLRESIRQAANDPERKPVLISGEPGLEKDNIARLVHFGSADRRLLL
MRFDASNIRGQGVELFGREGSHELSLLDCLGNGNLLIDCIDLAEPQLQARLIALATEGHPAFSGRILLTAESSLKELEGI
ATQIRVPPLRVRRSDLGDWLRYSLRQRSPSLGWSRPPELPEAIVRRLQSHDFPNNIRELDSVVERALQQARSQAAAEQAS
AAITMVLPAALPEDVFWVNSREPNLRFEIWRWKPQLRQLMRSPQLWNGLLFGLVSWVFVLVNLWLWFGPQDRAHNSMLKF
FWAWWWPLILLTYPLVGRLWCAVCPFMVWGEIAQNSKKALAKLISTLGLPTGWLQPRLWPHGDHDSWGAPVLAIGFAAIL
IWEEVWNLEDTARLSSYLLLLITSGAVLCSLVFEKRFWCRYLCPVGGMNGLFAKLSILELRAQSGTCSGSCTSYACFKGG
PAEGEGMASEGCPLGTHPAHLSDNRNCVLCLTCAQACPHHSVQLRLRPPAADLQRSMHGPKGEKGLILVLAGGITLHHWQ
RLLGWLPLAPESLQEGPLFARLVFAALALSLPAAAGLWVERRWLYTALPLLWSVLLARHLPIGMAEAGTVLPIGWPQWSA
NPKVIGFCQSLAIAVGWLGCVVLLRRLISRQRQPWLTASGALLVLALASRWVVHI

Sequences:

>Translated_695_residues
MESTTPSHQCMMRMAPYLIGRPRRGVVGGSRYACKLRESIRQAANDPERKPVLISGEPGLEKDNIARLVHFGSADRRLLL
MRFDASNIRGQGVELFGREGSHELSLLDCLGNGNLLIDCIDLAEPQLQARLIALATEGHPAFSGRILLTAESSLKELEGI
ATQIRVPPLRVRRSDLGDWLRYSLRQRSPSLGWSRPPELPEAIVRRLQSHDFPNNIRELDSVVERALQQARSQAAAEQAS
AAITMVLPAALPEDVFWVNSREPNLRFEIWRWKPQLRQLMRSPQLWNGLLFGLVSWVFVLVNLWLWFGPQDRAHNSMLKF
FWAWWWPLILLTYPLVGRLWCAVCPFMVWGEIAQNSKKALAKLISTLGLPTGWLQPRLWPHGDHDSWGAPVLAIGFAAIL
IWEEVWNLEDTARLSSYLLLLITSGAVLCSLVFEKRFWCRYLCPVGGMNGLFAKLSILELRAQSGTCSGSCTSYACFKGG
PAEGEGMASEGCPLGTHPAHLSDNRNCVLCLTCAQACPHHSVQLRLRPPAADLQRSMHGPKGEKGLILVLAGGITLHHWQ
RLLGWLPLAPESLQEGPLFARLVFAALALSLPAAAGLWVERRWLYTALPLLWSVLLARHLPIGMAEAGTVLPIGWPQWSA
NPKVIGFCQSLAIAVGWLGCVVLLRRLISRQRQPWLTASGALLVLALASRWVVHI
>Mature_695_residues
MESTTPSHQCMMRMAPYLIGRPRRGVVGGSRYACKLRESIRQAANDPERKPVLISGEPGLEKDNIARLVHFGSADRRLLL
MRFDASNIRGQGVELFGREGSHELSLLDCLGNGNLLIDCIDLAEPQLQARLIALATEGHPAFSGRILLTAESSLKELEGI
ATQIRVPPLRVRRSDLGDWLRYSLRQRSPSLGWSRPPELPEAIVRRLQSHDFPNNIRELDSVVERALQQARSQAAAEQAS
AAITMVLPAALPEDVFWVNSREPNLRFEIWRWKPQLRQLMRSPQLWNGLLFGLVSWVFVLVNLWLWFGPQDRAHNSMLKF
FWAWWWPLILLTYPLVGRLWCAVCPFMVWGEIAQNSKKALAKLISTLGLPTGWLQPRLWPHGDHDSWGAPVLAIGFAAIL
IWEEVWNLEDTARLSSYLLLLITSGAVLCSLVFEKRFWCRYLCPVGGMNGLFAKLSILELRAQSGTCSGSCTSYACFKGG
PAEGEGMASEGCPLGTHPAHLSDNRNCVLCLTCAQACPHHSVQLRLRPPAADLQRSMHGPKGEKGLILVLAGGITLHHWQ
RLLGWLPLAPESLQEGPLFARLVFAALALSLPAAAGLWVERRWLYTALPLLWSVLLARHLPIGMAEAGTVLPIGWPQWSA
NPKVIGFCQSLAIAVGWLGCVVLLRRLISRQRQPWLTASGALLVLALASRWVVHI

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 77419; Mature: 77419

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50045 SIGMA54_INTERACT_4 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESTTPSHQCMMRMAPYLIGRPRRGVVGGSRYACKLRESIRQAANDPERKPVLISGEPGL
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
EKDNIARLVHFGSADRRLLLMRFDASNIRGQGVELFGREGSHELSLLDCLGNGNLLIDCI
CHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEE
DLAEPQLQARLIALATEGHPAFSGRILLTAESSLKELEGIATQIRVPPLRVRRSDLGDWL
CCCCHHHHHEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RYSLRQRSPSLGWSRPPELPEAIVRRLQSHDFPNNIRELDSVVERALQQARSQAAAEQAS
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAITMVLPAALPEDVFWVNSREPNLRFEIWRWKPQLRQLMRSPQLWNGLLFGLVSWVFVL
CEEEEEECCCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHH
VNLWLWFGPQDRAHNSMLKFFWAWWWPLILLTYPLVGRLWCAVCPFMVWGEIAQNSKKAL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKLISTLGLPTGWLQPRLWPHGDHDSWGAPVLAIGFAAILIWEEVWNLEDTARLSSYLLL
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LITSGAVLCSLVFEKRFWCRYLCPVGGMNGLFAKLSILELRAQSGTCSGSCTSYACFKGG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCC
PAEGEGMASEGCPLGTHPAHLSDNRNCVLCLTCAQACPHHSVQLRLRPPAADLQRSMHGP
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCEEEEECCCHHHHHHHHCCC
KGEKGLILVLAGGITLHHWQRLLGWLPLAPESLQEGPLFARLVFAALALSLPAAAGLWVE
CCCCCEEEEEECCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHHCHHHH
RRWLYTALPLLWSVLLARHLPIGMAEAGTVLPIGWPQWSANPKVIGFCQSLAIAVGWLGC
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
VVLLRRLISRQRQPWLTASGALLVLALASRWVVHI
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECC
>Mature Secondary Structure
MESTTPSHQCMMRMAPYLIGRPRRGVVGGSRYACKLRESIRQAANDPERKPVLISGEPGL
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
EKDNIARLVHFGSADRRLLLMRFDASNIRGQGVELFGREGSHELSLLDCLGNGNLLIDCI
CHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEECCCCCCCEEEEEECCCCCEEEEEE
DLAEPQLQARLIALATEGHPAFSGRILLTAESSLKELEGIATQIRVPPLRVRRSDLGDWL
CCCCHHHHHEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RYSLRQRSPSLGWSRPPELPEAIVRRLQSHDFPNNIRELDSVVERALQQARSQAAAEQAS
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAITMVLPAALPEDVFWVNSREPNLRFEIWRWKPQLRQLMRSPQLWNGLLFGLVSWVFVL
CEEEEEECCCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHH
VNLWLWFGPQDRAHNSMLKFFWAWWWPLILLTYPLVGRLWCAVCPFMVWGEIAQNSKKAL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKLISTLGLPTGWLQPRLWPHGDHDSWGAPVLAIGFAAILIWEEVWNLEDTARLSSYLLL
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LITSGAVLCSLVFEKRFWCRYLCPVGGMNGLFAKLSILELRAQSGTCSGSCTSYACFKGG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCC
PAEGEGMASEGCPLGTHPAHLSDNRNCVLCLTCAQACPHHSVQLRLRPPAADLQRSMHGP
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCEEEEECCCHHHHHHHHCCC
KGEKGLILVLAGGITLHHWQRLLGWLPLAPESLQEGPLFARLVFAALALSLPAAAGLWVE
CCCCCEEEEEECCCHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHHCHHHH
RRWLYTALPLLWSVLLARHLPIGMAEAGTVLPIGWPQWSANPKVIGFCQSLAIAVGWLGC
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
VVLLRRLISRQRQPWLTASGALLVLALASRWVVHI
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA