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The map label for this gene is rbgA [H]

Identifier: 33864372

GI number: 33864372

Start: 2221523

End: 2222413

Strand: Direct

Name: rbgA [H]

Synonym: PMT2108

Alternate gene names: 33864372

Gene position: 2221523-2222413 (Clockwise)

Preceding gene: 33864371

Following gene: 33864373

Centisome position: 92.15

GC content: 57.35

Gene sequence:

>891_bases
TTGTCCGGTGCTGGTAGTGCCGTGAGCACTCCAACAATTCAGTGGTATCCAGGCCACATCGCTAAAGCGGAACAACAACT
CAGCAAGAATCTCGACAAAATTGACCTTGTCATTGAGGTGCGGGATGCTCGCATCCCGATAGCCACTGCTCATCCGCAGC
TGCAGCGATGGATTAAGGGCAAGCAGCATTTACTAGTGATCAACCGCCGCGACATGATTTCCTCTGCGGCTCGACAATCT
TGGGATCGTTGGTTCCGTGACCAAGCCCAAACCCCATGGTGGTGTGATGCCAAGGCTGGCACAGGTGTTAAGCAGGTTCA
ACAAGCAGCCATACGAGCTGGGGATCAGCTCAATCAACGCCGCCGCTCCCGTGGTATGCGACCACGCCCTGTAAGGGCCC
TCACTTTGGGGTTCCCCAATGTGGGCAAGTCCGCCCTGATCAATCGTTTGGTCCGTCAGAAAGTTGTGGAGAGTGCTCGT
CGCGCTGGCGTGACCCGCACCCTGCGCTGGGTGCGCTTGGGTCAAGACCTTGACTTACTTGATGCCCCCGGCGTTTTGCC
ACCCCGCCTCGATGACCAACAGGCGGCTTTGCATCTCGCCCTTTGCGATGACATCGGCCAAGCCGCCTATGACGTTGAGT
TGGTGGCCCTCGCGTTGCTGGAGACACTGACTGTGTTGGAGAAGCAGGCGGCGGCTGGGGTGGTTGCAGGAATCCTTAAG
CAGCGTTACGGCATCAACTTGGCCGGTGATCAAGCTGATGCCCATGCTTGGTTGATGACTGTTGCCGAACGCCACACCTC
GGGTGATACAGAGCGAATGGCCCAAAGGCTTTTAGATGACTTTCGCCGAGCACTGTTGGGGCCGATCGCACTGGAGTTGC
CGTTGCCATGA

Upstream 100 bases:

>100_bases
CTGATGAATTAAATGTGGATGTGATCGTGATGGGCACACGCGGTGTCAATTTGGATGGCGATAGCGAGAGCACAGCAGCC
CGGGTGATCCAGTTGGCCCC

Downstream 100 bases:

>100_bases
CATTGGACGAACGGACATTGGCGTTCGGGAAAGGTGAGGGTGAATTGCTGAAGCTGCACTACCCCAAACCCTTGCCGATG
CGACTGGATCGTTGGCTTGT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSGAGSAVSTPTIQWYPGHIAKAEQQLSKNLDKIDLVIEVRDARIPIATAHPQLQRWIKGKQHLLVINRRDMISSAARQS
WDRWFRDQAQTPWWCDAKAGTGVKQVQQAAIRAGDQLNQRRRSRGMRPRPVRALTLGFPNVGKSALINRLVRQKVVESAR
RAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYDVELVALALLETLTVLEKQAAAGVVAGILK
QRYGINLAGDQADAHAWLMTVAERHTSGDTERMAQRLLDDFRRALLGPIALELPLP

Sequences:

>Translated_296_residues
MSGAGSAVSTPTIQWYPGHIAKAEQQLSKNLDKIDLVIEVRDARIPIATAHPQLQRWIKGKQHLLVINRRDMISSAARQS
WDRWFRDQAQTPWWCDAKAGTGVKQVQQAAIRAGDQLNQRRRSRGMRPRPVRALTLGFPNVGKSALINRLVRQKVVESAR
RAGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYDVELVALALLETLTVLEKQAAAGVVAGILK
QRYGINLAGDQADAHAWLMTVAERHTSGDTERMAQRLLDDFRRALLGPIALELPLP
>Mature_295_residues
SGAGSAVSTPTIQWYPGHIAKAEQQLSKNLDKIDLVIEVRDARIPIATAHPQLQRWIKGKQHLLVINRRDMISSAARQSW
DRWFRDQAQTPWWCDAKAGTGVKQVQQAAIRAGDQLNQRRRSRGMRPRPVRALTLGFPNVGKSALINRLVRQKVVESARR
AGVTRTLRWVRLGQDLDLLDAPGVLPPRLDDQQAALHLALCDDIGQAAYDVELVALALLETLTVLEKQAAAGVVAGILKQ
RYGINLAGDQADAHAWLMTVAERHTSGDTERMAQRLLDDFRRALLGPIALELPLP

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=308, Percent_Identity=29.2207792207792, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI193211047, Length=221, Percent_Identity=31.2217194570136, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI25143545, Length=190, Percent_Identity=24.7368421052632, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71982363, Length=196, Percent_Identity=24.4897959183673, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115535155, Length=190, Percent_Identity=24.7368421052632, Blast_Score=71, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6323744, Length=237, Percent_Identity=29.535864978903, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6324381, Length=174, Percent_Identity=27.0114942528736, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320842, Length=212, Percent_Identity=25, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85815858, Length=228, Percent_Identity=29.3859649122807, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI28572990, Length=186, Percent_Identity=26.3440860215054, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32842; Mature: 32711

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAGSAVSTPTIQWYPGHIAKAEQQLSKNLDKIDLVIEVRDARIPIATAHPQLQRWIKG
CCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCHHHHHHHCC
KQHLLVINRRDMISSAARQSWDRWFRDQAQTPWWCDAKAGTGVKQVQQAAIRAGDQLNQR
CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHH
RRSRGMRPRPVRALTLGFPNVGKSALINRLVRQKVVESARRAGVTRTLRWVRLGQDLDLL
HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
DAPGVLPPRLDDQQAALHLALCDDIGQAAYDVELVALALLETLTVLEKQAAAGVVAGILK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRYGINLAGDQADAHAWLMTVAERHTSGDTERMAQRLLDDFRRALLGPIALELPLP
HHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHEECCCC
>Mature Secondary Structure 
SGAGSAVSTPTIQWYPGHIAKAEQQLSKNLDKIDLVIEVRDARIPIATAHPQLQRWIKG
CCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEECCHHHHHHHCC
KQHLLVINRRDMISSAARQSWDRWFRDQAQTPWWCDAKAGTGVKQVQQAAIRAGDQLNQR
CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHH
RRSRGMRPRPVRALTLGFPNVGKSALINRLVRQKVVESARRAGVTRTLRWVRLGQDLDLL
HHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
DAPGVLPPRLDDQQAALHLALCDDIGQAAYDVELVALALLETLTVLEKQAAAGVVAGILK
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRYGINLAGDQADAHAWLMTVAERHTSGDTERMAQRLLDDFRRALLGPIALELPLP
HHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]