Click here to switch to the map view.

The map label for this gene is ycf3 [H]

Identifier: 33864257

GI number: 33864257

Start: 2106412

End: 2106933

Strand: Direct

Name: ycf3 [H]

Synonym: PMT1992

Alternate gene names: 33864257

Gene position: 2106412-2106933 (Clockwise)

Preceding gene: 33864253

Following gene: 33864259

Centisome position: 87.37

GC content: 50.77

Gene sequence:

>522_bases
GTGCCACGCACCCAAAACAAAGACAACTTCATTGACAAGACCTTCACGGTGATGGCCGATCTAATCGTGAAGATGATGCC
AATCAACGATAAGGCGAAAAGAGCCTATGTGTATTACCGCGATGGCCTATCAGCCCAGAACGCAGGCGACTATGCAGAGG
CACTGGAAAACTATGAAGAGAGTCTCAAGCTTGAGGAAAGCCCCTTCGACCGGAGTGAAACCCTCAAGAACATGGCGATC
ATCTATATGAGCAACGGGGACGAGGACCTCGCTCTTGATACCTATCAGAGGGCCCTTGACCAAAACTCAAATCAGCCCTC
CTGCCTAAAGAACATGGGCTTGATTTACGAAAAACGCGGCCGCACAGCGCAAGAAGCTGGTCTGCAAGACGAAGCTGATC
GGTTGTTCGACAGAGCTGCAGACGTGTGGACCCAAGCGGTAAGGCTCTATCCCGGCGGCTACCTAGATATTGAGAACTGG
CTGAAAACAACAGGCCGAAGCAACATAGACGTCTATTTCTAA

Upstream 100 bases:

>100_bases
TAGCCCATCCCATAACAGCAGCCCAAAGATCTCACCAGAGACTCAAAACAGTCTTTTCAGAATAAGACGAGGATAATGGT
GTGATTCCTTTATTCACGCC

Downstream 100 bases:

>100_bases
AGCGAAAACATCCTTCAGCAGCCATCATCAGCTGGATTCACACCGAGGGCCATGACCAAAGCCTCAGTCACACTCGCAGC
CTCAAGTAGTTCCAACTCCA

Product: photosystem I assembly protein Ycf3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPRTQNKDNFIDKTFTVMADLIVKMMPINDKAKRAYVYYRDGLSAQNAGDYAEALENYEESLKLEESPFDRSETLKNMAI
IYMSNGDEDLALDTYQRALDQNSNQPSCLKNMGLIYEKRGRTAQEAGLQDEADRLFDRAADVWTQAVRLYPGGYLDIENW
LKTTGRSNIDVYF

Sequences:

>Translated_173_residues
MPRTQNKDNFIDKTFTVMADLIVKMMPINDKAKRAYVYYRDGLSAQNAGDYAEALENYEESLKLEESPFDRSETLKNMAI
IYMSNGDEDLALDTYQRALDQNSNQPSCLKNMGLIYEKRGRTAQEAGLQDEADRLFDRAADVWTQAVRLYPGGYLDIENW
LKTTGRSNIDVYF
>Mature_172_residues
PRTQNKDNFIDKTFTVMADLIVKMMPINDKAKRAYVYYRDGLSAQNAGDYAEALENYEESLKLEESPFDRSETLKNMAII
YMSNGDEDLALDTYQRALDQNSNQPSCLKNMGLIYEKRGRTAQEAGLQDEADRLFDRAADVWTQAVRLYPGGYLDIENWL
KTTGRSNIDVYF

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022818
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 19896; Mature: 19765

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTQNKDNFIDKTFTVMADLIVKMMPINDKAKRAYVYYRDGLSAQNAGDYAEALENYEE
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCCCCCCCHHHHHHHHHHH
SLKLEESPFDRSETLKNMAIIYMSNGDEDLALDTYQRALDQNSNQPSCLKNMGLIYEKRG
HCCCCCCCCCHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCC
RTAQEAGLQDEADRLFDRAADVWTQAVRLYPGGYLDIENWLKTTGRSNIDVYF
CCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEC
>Mature Secondary Structure 
PRTQNKDNFIDKTFTVMADLIVKMMPINDKAKRAYVYYRDGLSAQNAGDYAEALENYEE
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCCCCCCCHHHHHHHHHHH
SLKLEESPFDRSETLKNMAIIYMSNGDEDLALDTYQRALDQNSNQPSCLKNMGLIYEKRG
HCCCCCCCCCHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHCCC
RTAQEAGLQDEADRLFDRAADVWTQAVRLYPGGYLDIENWLKTTGRSNIDVYF
CCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA