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The map label for this gene is som

Identifier: 33864244

GI number: 33864244

Start: 2089045

End: 2090787

Strand: Reverse

Name: som

Synonym: PMT1979

Alternate gene names: NA

Gene position: 2090787-2089045 (Counterclockwise)

Preceding gene: 33864249

Following gene: 33864243

Centisome position: 86.72

GC content: 52.78

Gene sequence:

>1743_bases
ATGAAACTCTTCCAGCAATTGCTGGTGGCACCTGCTGCTTTGGGCCTTATGGCACCAATGGCTGCTAATGCCGCAGACCT
AGACATCAAAGGTGTGTCCGATTATTCGGCCTCCAGCGAGCAGGTCACCAGCATCTCCCAATTCCAAGATGTTTACCCAA
CCGATTGGGCTTACCAGGCGCTGAGCAACCTGATTGAGCGCTACGGCTGTGTAGCTGGCTATCCAAGCGGAAGCTACCTC
GGCAACAGAGCAATGACCCGCTTTGAAGCGGCTGCTCTATTGAATGCTTGCCTCGATCGCATCACTGAAGTCACCGACGA
ACTGCGTCGTCTGCTCAACGAATTCGAGCAGGAGCTCGCAATCCTCAAGGGCCGTGTTGATGGGCTAGAAGCCCGCGTTG
GTGAACTCGAAGCCACTCAGTTTTCCACCACCACCAAGCTTGTTGGTCAGACATCCTTCGTGATTGGCGCCAACAGCTAC
GGCGGTGACGCTAGACAAGGCTTCCGAGATGAGGTTTTCACCACATCCGCGTGGGCTGGCTCAAACTACCGCTCTGGAAA
GGCCGGCGACGAGCGAGCTGATGAAGCTGCCGCTGCCTCTGGCGCGACCGTCTTCAACTACGACATGCGCCTTGAGCTGA
ATACCAGCTTCACGGGTAAGGATCTCTTGAAGACTCGTCTGCGCGCGGGCAACTTTGCCGAATCCCCCTTCGGCAGTAAT
GGCTATGTCGGCCTCTCAGCCATGGAAGTGGCTTTTGGAGAATCTGGTGACGAGAATGAAGTCACCGTTGATCGCCTCTG
GTATCAGTTCCCACTCGGCGAAGAGTTCACTGCGACCATTGGTGGCATGGTTCGCCAGGACAACATGCTTGCCGTATGGC
CAAGCAACTATCCTGCTGAAACTGTCATCGATTTCTTCACCTACGCGGGTGCACCTGGTGCTTATAACCTCGCCAAAGGT
GGTGGAGCCGGTATCTGGTGGGATGACAACGACAGCGGTTGGAGCATTAGCACTAGCTATCTCTCTACAAATGCTGATGA
TGGCAACCCCAATACTGGTGGAGTTGCTACTGATGGTGCTGGCTCCAATGCAACAGCCCAAATCGCTTACGCCGATGAGC
GTTGGGGTGCTGCTGCGGCCTACAACTACGCCTCCACTGATAATGGCGTAGGTTTGTATGCTGGAAATGGCACACCACTT
GCTAATGACATTCAAGGCTTTGGAACTACCAACTCCTTTGCTTTAAGCGCTTGGTGGGCTCCAGAAAATACCGGTTGGAT
GCCAAGCGTCAGTGCTGGTTGGGGTATTAACTCCGTAAGTAGCAACAGCAACTCCGGCAACACACAGGTGCTGGGCGTTG
ACACTGACGACATCTTAGATAGTGCTACATCTCAATCCTGGTATGTAGCTCTTCAGTGGGAAGATGCATTCATCGAGGGC
AATGTCCTAGGTGTTGCAGGAGGTCAACCCACCTTCGTGACCAACCTTAATTGGGACGGGAAATTCGAAGATGCGTATAA
GAAAGCATACGGCGAAGATCCAGATGACAATGTTGCTGATGGCAACTATGCATTTGAACTCTGGTACAAGTTCCAGGTTA
CAGACAACATTTCTGTGACTCCTGCCGTGTTCTATCTCAGCCGTCCTTACGGTGAGCTGACTGATGGCTCACTTACCAAA
GGCGGCGAAGACGACACCTTTAGCAACTTTGGTGGTTTAGTTAGAACCACATTTAAGTTCTGA

Upstream 100 bases:

>100_bases
TTGAAACCATTGATACATCTGTCACACCAAGAGGTGTTTAAACAGAGAGTAAGGGCCAACATCGAATCGGCGCATTGCGC
CCATCCGTGTGAGGAACCTA

Downstream 100 bases:

>100_bases
TCAATTGGCCCAACAATATGTTGGGCCATTACTACTACCCCTCACAATCTCGATCAATTTCAGCCCTCCGGAAACGGGGG
GCTTTTTCATGGCTTGATCC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 580; Mature: 580

Protein sequence:

>580_residues
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQALSNLIERYGCVAGYPSGSYL
GNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELAILKGRVDGLEARVGELEATQFSTTTKLVGQTSFVIGANSY
GGDARQGFRDEVFTTSAWAGSNYRSGKAGDERADEAAAASGATVFNYDMRLELNTSFTGKDLLKTRLRAGNFAESPFGSN
GYVGLSAMEVAFGESGDENEVTVDRLWYQFPLGEEFTATIGGMVRQDNMLAVWPSNYPAETVIDFFTYAGAPGAYNLAKG
GGAGIWWDDNDSGWSISTSYLSTNADDGNPNTGGVATDGAGSNATAQIAYADERWGAAAAYNYASTDNGVGLYAGNGTPL
ANDIQGFGTTNSFALSAWWAPENTGWMPSVSAGWGINSVSSNSNSGNTQVLGVDTDDILDSATSQSWYVALQWEDAFIEG
NVLGVAGGQPTFVTNLNWDGKFEDAYKKAYGEDPDDNVADGNYAFELWYKFQVTDNISVTPAVFYLSRPYGELTDGSLTK
GGEDDTFSNFGGLVRTTFKF

Sequences:

>Translated_580_residues
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQALSNLIERYGCVAGYPSGSYL
GNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELAILKGRVDGLEARVGELEATQFSTTTKLVGQTSFVIGANSY
GGDARQGFRDEVFTTSAWAGSNYRSGKAGDERADEAAAASGATVFNYDMRLELNTSFTGKDLLKTRLRAGNFAESPFGSN
GYVGLSAMEVAFGESGDENEVTVDRLWYQFPLGEEFTATIGGMVRQDNMLAVWPSNYPAETVIDFFTYAGAPGAYNLAKG
GGAGIWWDDNDSGWSISTSYLSTNADDGNPNTGGVATDGAGSNATAQIAYADERWGAAAAYNYASTDNGVGLYAGNGTPL
ANDIQGFGTTNSFALSAWWAPENTGWMPSVSAGWGINSVSSNSNSGNTQVLGVDTDDILDSATSQSWYVALQWEDAFIEG
NVLGVAGGQPTFVTNLNWDGKFEDAYKKAYGEDPDDNVADGNYAFELWYKFQVTDNISVTPAVFYLSRPYGELTDGSLTK
GGEDDTFSNFGGLVRTTFKF
>Mature_580_residues
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQALSNLIERYGCVAGYPSGSYL
GNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELAILKGRVDGLEARVGELEATQFSTTTKLVGQTSFVIGANSY
GGDARQGFRDEVFTTSAWAGSNYRSGKAGDERADEAAAASGATVFNYDMRLELNTSFTGKDLLKTRLRAGNFAESPFGSN
GYVGLSAMEVAFGESGDENEVTVDRLWYQFPLGEEFTATIGGMVRQDNMLAVWPSNYPAETVIDFFTYAGAPGAYNLAKG
GGAGIWWDDNDSGWSISTSYLSTNADDGNPNTGGVATDGAGSNATAQIAYADERWGAAAAYNYASTDNGVGLYAGNGTPL
ANDIQGFGTTNSFALSAWWAPENTGWMPSVSAGWGINSVSSNSNSGNTQVLGVDTDDILDSATSQSWYVALQWEDAFIEG
NVLGVAGGQPTFVTNLNWDGKFEDAYKKAYGEDPDDNVADGNYAFELWYKFQVTDNISVTPAVFYLSRPYGELTDGSLTK
GGEDDTFSNFGGLVRTTFKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SLH (S-layer homology) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049
- InterPro:   IPR001119 [H]

Pfam domain/function: PF04966 OprB; PF00395 SLH [H]

EC number: NA

Molecular weight: Translated: 62196; Mature: 62196

Theoretical pI: Translated: 3.92; Mature: 3.92

Prosite motif: PS01072 SLH_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQA
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LSNLIERYGCVAGYPSGSYLGNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELA
HHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKGRVDGLEARVGELEATQFSTTTKLVGQTSFVIGANSYGGDARQGFRDEVFTTSAWAG
HHHCCCCCHHHHHCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHCCCHHHHEEEEECCC
SNYRSGKAGDERADEAAAASGATVFNYDMRLELNTSFTGKDLLKTRLRAGNFAESPFGSN
CCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
GYVGLSAMEVAFGESGDENEVTVDRLWYQFPLGEEFTATIGGMVRQDNMLAVWPSNYPAE
CEEEEEEEEEECCCCCCCCCEEEEHEEEECCCCCHHHHHHCCEEECCCEEEECCCCCCHH
TVIDFFTYAGAPGAYNLAKGGGAGIWWDDNDSGWSISTSYLSTNADDGNPNTGGVATDGA
HHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEECCC
GSNATAQIAYADERWGAAAAYNYASTDNGVGLYAGNGTPLANDIQGFGTTNSFALSAWWA
CCCCEEEEEECCCCCCCCEEECCCCCCCCEEEEECCCCCCHHCCCCCCCCCCEEEEEEEC
PENTGWMPSVSAGWGINSVSSNSNSGNTQVLGVDTDDILDSATSQSWYVALQWEDAFIEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCEEEEEEEECEEEEC
NVLGVAGGQPTFVTNLNWDGKFEDAYKKAYGEDPDDNVADGNYAFELWYKFQVTDNISVT
CEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
PAVFYLSRPYGELTDGSLTKGGEDDTFSNFGGLVRTTFKF
EEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECC
>Mature Secondary Structure
MKLFQQLLVAPAALGLMAPMAANAADLDIKGVSDYSASSEQVTSISQFQDVYPTDWAYQA
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LSNLIERYGCVAGYPSGSYLGNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELA
HHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKGRVDGLEARVGELEATQFSTTTKLVGQTSFVIGANSYGGDARQGFRDEVFTTSAWAG
HHHCCCCCHHHHHCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHCCCHHHHEEEEECCC
SNYRSGKAGDERADEAAAASGATVFNYDMRLELNTSFTGKDLLKTRLRAGNFAESPFGSN
CCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCC
GYVGLSAMEVAFGESGDENEVTVDRLWYQFPLGEEFTATIGGMVRQDNMLAVWPSNYPAE
CEEEEEEEEEECCCCCCCCCEEEEHEEEECCCCCHHHHHHCCEEECCCEEEECCCCCCHH
TVIDFFTYAGAPGAYNLAKGGGAGIWWDDNDSGWSISTSYLSTNADDGNPNTGGVATDGA
HHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEEECCC
GSNATAQIAYADERWGAAAAYNYASTDNGVGLYAGNGTPLANDIQGFGTTNSFALSAWWA
CCCCEEEEEECCCCCCCCEEECCCCCCCCEEEEECCCCCCHHCCCCCCCCCCEEEEEEEC
PENTGWMPSVSAGWGINSVSSNSNSGNTQVLGVDTDDILDSATSQSWYVALQWEDAFIEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCEEEEEEEECEEEEC
NVLGVAGGQPTFVTNLNWDGKFEDAYKKAYGEDPDDNVADGNYAFELWYKFQVTDNISVT
CEEEECCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCCC
PAVFYLSRPYGELTDGSLTKGGEDDTFSNFGGLVRTTFKF
EEEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]