| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
Click here to switch to the map view.
The map label for this gene is sfsA [H]
Identifier: 33864119
GI number: 33864119
Start: 1959329
End: 1960165
Strand: Direct
Name: sfsA [H]
Synonym: PMT1852
Alternate gene names: 33864119
Gene position: 1959329-1960165 (Clockwise)
Preceding gene: 33864117
Following gene: 33864120
Centisome position: 81.27
GC content: 56.39
Gene sequence:
>837_bases TTGGGCCTCAGACCATCTGATCATTTAGCAGCATTCTCAAGCCCTGCAAGCATCCCCATGACCAAGGCCATCCCGGAAGG ATTGTTAGGGAGTCCACTGCTCACATTCCCACCACTCGATGAAGGAATATTGGTGAAGCGCTACAAGCGCTTCCTTGCCG ATGTGGAGCTAGTCAGCGGCGAAATCGTGACAGCCCACTGCGCCAACACAGGCCCCATGACTGGTGTTCTTCATCCTGGA GGCAGAGTGAGAATCCGCCATGCGCCTTCTCCCAAGCGCAAGTTGGCCTGGACATGGGAGCAAGCGGAGGCACCCAGCGC CCAGGGCGGCCTCTGCTGGGTGGGTATCAACACAGCCTTGGCCAATAGCCTGATCAGAGCAGCGATTGAAGCCGGACACC TCAAGCAAGTCCTCGGTCCGATCGCAGCAATCCGTGCGGAAGTGACTTATGGAAGCAACCGACGCAGCCGCATTGACCTG TTTTTAACCCCTGATGCCAATTGCTCCGACACCAGACCCATTTACTTAGAGGTCAAGAACACCACCTGGATCGAAGACTC CTTAGCCCTCTTTCCCGACACGGTGACAGAACGAGGGCAAAAACATCTCAAAGAGCTAATCGGTGTGCTGCCAGAGTCCA GAGCAGTCTTGGTGCCCTGCCTCAGCCGCCACGATGTCCAAGCGTTCGCCCCAGGGGATAGCGCAGACCCTCGCTATGGC GAACTCTTTCGTCTGGCTCTTACAGCTGGCGTGGAAGTCATTCCCTGTTGCTTCGGATTTCACCTCGACAAGATCACCTG GGAAGGCCTTAGGCCTACCAAGACGACACAGAGTTGA
Upstream 100 bases:
>100_bases GCAGCCGCAATTACAAGCTGACGAACCAGCCCTCCCACCTTGCTTAGCAAGGTGCCGACTGTGACAACCAGAGCAATACG CTTTAAGGATCTCCCCATCC
Downstream 100 bases:
>100_bases CACAGCAAAAAGAGCTCCAGATGTAACAAAATGAACTTTCACCCCCGCAAATAGACCTAAAAGCGTCCACCAATCCCATA TTTCGTATCAACATGAACAT
Product: sugar fermentation stimulation protein A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MGLRPSDHLAAFSSPASIPMTKAIPEGLLGSPLLTFPPLDEGILVKRYKRFLADVELVSGEIVTAHCANTGPMTGVLHPG GRVRIRHAPSPKRKLAWTWEQAEAPSAQGGLCWVGINTALANSLIRAAIEAGHLKQVLGPIAAIRAEVTYGSNRRSRIDL FLTPDANCSDTRPIYLEVKNTTWIEDSLALFPDTVTERGQKHLKELIGVLPESRAVLVPCLSRHDVQAFAPGDSADPRYG ELFRLALTAGVEVIPCCFGFHLDKITWEGLRPTKTTQS
Sequences:
>Translated_278_residues MGLRPSDHLAAFSSPASIPMTKAIPEGLLGSPLLTFPPLDEGILVKRYKRFLADVELVSGEIVTAHCANTGPMTGVLHPG GRVRIRHAPSPKRKLAWTWEQAEAPSAQGGLCWVGINTALANSLIRAAIEAGHLKQVLGPIAAIRAEVTYGSNRRSRIDL FLTPDANCSDTRPIYLEVKNTTWIEDSLALFPDTVTERGQKHLKELIGVLPESRAVLVPCLSRHDVQAFAPGDSADPRYG ELFRLALTAGVEVIPCCFGFHLDKITWEGLRPTKTTQS >Mature_277_residues GLRPSDHLAAFSSPASIPMTKAIPEGLLGSPLLTFPPLDEGILVKRYKRFLADVELVSGEIVTAHCANTGPMTGVLHPGG RVRIRHAPSPKRKLAWTWEQAEAPSAQGGLCWVGINTALANSLIRAAIEAGHLKQVLGPIAAIRAEVTYGSNRRSRIDLF LTPDANCSDTRPIYLEVKNTTWIEDSLALFPDTVTERGQKHLKELIGVLPESRAVLVPCLSRHDVQAFAPGDSADPRYGE LFRLALTAGVEVIPCCFGFHLDKITWEGLRPTKTTQS
Specific function: Probable Regulatory Factor Involved In Maltose Metabolism. [C]
COG id: COG1489
COG function: function code R; DNA-binding protein, stimulates sugar fermentation
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sfsA family [H]
Homologues:
Organism=Escherichia coli, GI1786340, Length=220, Percent_Identity=40, Blast_Score=147, Evalue=8e-37,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005224 [H]
Pfam domain/function: PF03749 SfsA [H]
EC number: NA
Molecular weight: Translated: 30214; Mature: 30083
Theoretical pI: Translated: 8.15; Mature: 8.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLRPSDHLAAFSSPASIPMTKAIPEGLLGSPLLTFPPLDEGILVKRYKRFLADVELVSG CCCCCCCCHHCCCCCCCCCHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCC EIVTAHCANTGPMTGVLHPGGRVRIRHAPSPKRKLAWTWEQAEAPSAQGGLCWVGINTAL CEEEEEECCCCCCEEEECCCCEEEEEECCCCCCEEEEEEHHCCCCCCCCCEEEEECHHHH ANSLIRAAIEAGHLKQVLGPIAAIRAEVTYGSNRRSRIDLFLTPDANCSDTRPIYLEVKN HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECC TTWIEDSLALFPDTVTERGQKHLKELIGVLPESRAVLVPCLSRHDVQAFAPGDSADPRYG CEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCCCHH ELFRLALTAGVEVIPCCFGFHLDKITWEGLRPTKTTQS HHHHHHHHCCCCEEHHHHCCEECCEEECCCCCCCCCCC >Mature Secondary Structure GLRPSDHLAAFSSPASIPMTKAIPEGLLGSPLLTFPPLDEGILVKRYKRFLADVELVSG CCCCCCCHHCCCCCCCCCHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCC EIVTAHCANTGPMTGVLHPGGRVRIRHAPSPKRKLAWTWEQAEAPSAQGGLCWVGINTAL CEEEEEECCCCCCEEEECCCCEEEEEECCCCCCEEEEEEHHCCCCCCCCCEEEEECHHHH ANSLIRAAIEAGHLKQVLGPIAAIRAEVTYGSNRRSRIDLFLTPDANCSDTRPIYLEVKN HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECC TTWIEDSLALFPDTVTERGQKHLKELIGVLPESRAVLVPCLSRHDVQAFAPGDSADPRYG CEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCCCCCCHH ELFRLALTAGVEVIPCCFGFHLDKITWEGLRPTKTTQS HHHHHHHHCCCCEEHHHHCCEECCEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA